Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00062 ACTATTGCAGACACGGACAATATTTCAAAGGCTTATCCATCATGGTCAGAAGGGAATTTCTTCGAAAACCCTGTAAGCTTGGGATGGGTGGAAAAGTCCCCAAGACTTAGACAAGAGAGGTCTTGTGTGGTATTTGTTGACTTTGACTCTTCCCTTGTTGCTTGTTCAAGAAATCAGAACATATATGTCAATGGGTTGGGCAAGATGCCAGGTCCAGAATCTGATGTTTGTGCTGAAGAAACTAAACTGAGAAATGTGACTTATTTTATAACAGCTCAAGAGGTTGTCGATATTCGATCCAAGTTTGCTGCATTTGGAATTGAATTGGAAGAAGTATGGAAGCGTATCCATCACAAGTTTTGGGAAATTTCTGCTACCCTTCTTCCAACAATAGTGACTGTGTCCTTGTTTCATGGGAAGGAAAAGGGTTTTATTTCCTTGCCTAAGTTGTGTTGCACGATGATGGTTGTAGATCTTTTATCTTCTGGTTCTACTGGAACTGCCATTTCTCACACTGTAGAGACCATTGCTGAGTTCGTAGTTACTGCTAAAGATGTTCTTGTGAAAAAGGATAGTTTTAATGAACTTGGTGCTTACATGGAAAGAATTAAGCCTGTCTTGGAAGAGTTGAAGAAAGGAAAAGTCAGTGATTCTGAGTCATTCAACAAAGCCATTGAGACCATGAATAAAGAAATTAAAGATGCAAAGGTACTAGCAGAAGAGTGCAGCAAGAAAAGCAAGGTTTATCTACTAATGAACTGCAGGTCCATTGCTAAGAAGATAGAGGATCACACAAAACAGCTGAGTTGGGCACTTAGTCTTCTTCCTTTAGCCACAACAGGTCTTTCTTCAGGAATAGTTGAAGATATTGAAAAGCTATGTGACAGCATGCAGACATCTGGATTTAAAGAAGCTCTAGATGAAGAAGCGATTTTAGATAAAATTGACTCAGGGATTAGGGAAAACAATGTTGATCGTTCCCATGCAAACAAAATGCTACTTCTCATAGCTGAAGCTGTTGGGATTAGGAATGAGAGGTCAACAATAAAGTTGGAACTTGAAGAGTTTAAGAGTGAAATTGAAAAGGCCCGGGATAGGAAGGAGTTAGCTGAAGCTATGCAGATGGATCAAATCATTGCTTTGTTGGAAAGGGCTGATGCAGCTTCATCACCAAGGGAAAAGGAACTCAGATACTTTGCGAAACGCCAATCTTTGGGTAGTCAAATATTGGAGCCTTTGCAGTCATTTTATTGCCCCATCACCCAGGATGTTATGGTGGATCCTGTTGAAATTTCATCTGGGCAGACATTTGAGAGAAGTGCCATAGAAAAGTGGTTTGCAGAAGGAAATAAATTGTGCCCCTTGACCTTGATTCCCCTGGACACATCAGTTTTGAGACCTAACAAAATGTTGAAACGATCCATACAAGAGTGGAAAGATAGAAATACAATGATTACAATTGCTACATTGAAAGAAAAAATCCTGTCTGGAAATGATGAGGAAGTGCTGCATGATCTGCAAATTGTTCAGAATTTGTGTGAAGAAAAAGAACAACACAGGGAATGGGTTATTCTGGAGGGTTACATCCTAACTCTCATTCAAACTCTATCAAGAAACCGTGATATAAGAAGACATTCTCTTTCCATCCTTGGCATGCTGGCAAAGGATAGTGAAGAAGCTAAGGTAAAAATTTCAACCGCAGATGGTGCAATTGAATCAATTGTTCGGTCTCTTGGACGTAATACAGTGGAAAGGAAGTTAGCAGTAGCATTGCTGCTTGAATTGTCCAAATATGATTTGGCACTAGAACACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGTGGAGATGACAATCAAGCTGCTAGAGATGCAACGGAGCTATTGGAGAATCTGTCATACTCTGATCAGAATGTTATTCAGATGACAAAAGTAAATTACTTCAAGCATTTATTGCAGCGTCTTTCCACAGGACCAGAAGATGTGAAGATGATTATGGCTAAAACTTTAGCAGAAATGGAGTTAAATGACCATAATAGAGAGTCCTTGTTTGATGGTGGTGTGCTGGTTCCTCTTCTAGACATGTTCTCACACAATGATCTTAAGGTGAAAACAGTTTCTATCAAAGCTCTTAAGAATTTATCCAATTCAAAGAAAAATGGACAGGAAATGATAAGACAGGGGGCTGCACGGCCACTACTTAACCTTCTTTTCAACCAAAGCATATACACTGCAAGTTTGTGGGAAGATCTAACAATCATAATCGTGCAACTTGCTGCATCAACTATCTCTCAGGACTCTCAAACACCTGTTTTATTGCTAGATTCTGATGATGATGTTTTCAATCTCTTCAATTTAGTTAATGTCACACAGCCTGTTGTGCAACAGCATGTCACAGAGCCTGTTGTGCAACAGAACATTATCCAGACCTTTTATGACTTGTGTCAAACACCCTCGGCTTCGTGTATCAGAACCAAACTAAAAGAGTACCCAGCTGTTCCAAAATTGGTTCAACTGTGCGAGAATGAAAACCAAAACCTACGAGCAAGTGCTGTAAAGTTGTTTTCTTGCTTGGTGGAGAATTGCGATGAAGCCATCATACAGGAGAGCGTGAACCAGAGATGCATCAATACTCTACTCCGGATCATAAAATCTTCATCTGATGATGAGGAAAAACTTTCTGCAATGGGAATTATATGCTATCTTCCAGAAACTGACCAGATAACTCGATGGCTTCTGGATGCTGGGGCACTGGAAATCATTAAAAGTTGTGTCCAAGATGGGAAAGACAGGGATCATCAAAGGAGAACTTTAGTTGAGAATGCCATTGGTGCCCTTTGTCGTTTTACTGTTCCAACAAACTTGGAATGGCAAAAAAGTGCAGCTGAAACAGGAATCATAACTGTTTTGGTGCAACTGCTTGAAAATGGAACCACCTTGACAAAACAACGCGTGGCACAGTGTCTTGCTCAATTTTCTAGAAGCTCATTTGGGCTAAGCAGGCCGATACCAAAGCGCAAAGGACTATGGTGTTTCTCAGCTCATGCTGATATTGGCTGCATGGTTCATGGTGGAATATGCTCAGTCAAATCATCATTTTGTCTCTTGGAGGCCAATGCAGTGGGACCGCTCACAAGAACTCTTGAGGAGCCTGATCCTGGAGTTTGTGAAGCTTCTTTGGATGCCCTTTTAACATTGATAGAAGGTGAAAGACTGCAGCATGGTAGTAAAGTTCTTGCAGATGCAAATGCCATACCACTCATAATCAAATATCTTGGTTCACACTCCCCTGGCTTGCTAGAGAAGTCTCTAAATGCTTTGGAAAGGATTTTCCGGCTGGTCGAATTCAAACAGAAGTATGGAGCCTCAGCTCAAATGCCTCTGGTTGATTTGACTCAGAGAGGTAATGGTAGTGTTAGATCCATGTCAGCTAGAATATTGGCACAGTTGAACGTACTTCATGATCAATCTTCATACTTCTAA 3498 0.4051 TIADTDNISKAYPSWSEGNFFENPVSLGWVEKSPRLRQERSCVVFVDFDSSLVACSRNQNIYVNGLGKMPGPESDVCAEETKLRNVTYFITAQEVVDIRSKFAAFGIELEEVWKRIHHKFWEISATLLPTIVTVSLFHGKEKGFISLPKLCCTMMVVDLLSSGSTGTAISHTVETIAEFVVTAKDVLVKKDSFNELGAYMERIKPVLEELKKGKVSDSESFNKAIETMNKEIKDAKVLAEECSKKSKVYLLMNCRSIAKKIEDHTKQLSWALSLLPLATTGLSSGIVEDIEKLCDSMQTSGFKEALDEEAILDKIDSGIRENNVDRSHANKMLLLIAEAVGIRNERSTIKLELEEFKSEIEKARDRKELAEAMQMDQIIALLERADAASSPREKELRYFAKRQSLGSQILEPLQSFYCPITQDVMVDPVEISSGQTFERSAIEKWFAEGNKLCPLTLIPLDTSVLRPNKMLKRSIQEWKDRNTMITIATLKEKILSGNDEEVLHDLQIVQNLCEEKEQHREWVILEGYILTLIQTLSRNRDIRRHSLSILGMLAKDSEEAKVKISTADGAIESIVRSLGRNTVERKLAVALLLELSKYDLALEHIGKVQGCILLLVTMSSGDDNQAARDATELLENLSYSDQNVIQMTKVNYFKHLLQRLSTGPEDVKMIMAKTLAEMELNDHNRESLFDGGVLVPLLDMFSHNDLKVKTVSIKALKNLSNSKKNGQEMIRQGAARPLLNLLFNQSIYTASLWEDLTIIIVQLAASTISQDSQTPVLLLDSDDDVFNLFNLVNVTQPVVQQHVTEPVVQQNIIQTFYDLCQTPSASCIRTKLKEYPAVPKLVQLCENENQNLRASAVKLFSCLVENCDEAIIQESVNQRCINTLLRIIKSSSDDEEKLSAMGIICYLPETDQITRWLLDAGALEIIKSCVQDGKDRDHQRRTLVENAIGALCRFTVPTNLEWQKSAAETGIITVLVQLLENGTTLTKQRVAQCLAQFSRSSFGLSRPIPKRKGLWCFSAHADIGCMVHGGICSVKSSFCLLEANAVGPLTRTLEEPDPGVCEASLDALLTLIEGERLQHGSKVLADANAIPLIIKYLGSHSPGLLEKSLNALERIFRLVEFKQKYGASAQMPLVDLTQRGNGSVRSMSARILAQLNVLHDQSSYF 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00062 1165 Coils Coil 346 373 - -
Vimu9g00062 1165 Gene3D - 781 1003 IPR011989 -
Vimu9g00062 1165 Gene3D - 167 279 IPR036537 GO:0007166
Vimu9g00062 1165 CDD MLKL_NTD 168 280 - -
Vimu9g00062 1165 SUPERFAMILY RING/U-box 402 484 - -
Vimu9g00062 1165 SUPERFAMILY ARM repeat 489 1155 IPR016024 -
Vimu9g00062 1165 ProSiteProfiles RPW8 domain profile. 154 309 IPR008808 -
Vimu9g00062 1165 Gene3D - 583 780 IPR011989 -
Vimu9g00062 1165 Gene3D - 483 582 IPR011989 -
Vimu9g00062 1165 SMART arm_5 910 956 IPR000225 GO:0005515
Vimu9g00062 1165 SMART arm_5 681 721 IPR000225 GO:0005515
Vimu9g00062 1165 SMART arm_5 722 773 IPR000225 GO:0005515
Vimu9g00062 1165 SMART arm_5 598 639 IPR000225 GO:0005515
Vimu9g00062 1165 SMART arm_5 1033 1073 IPR000225 GO:0005515
Vimu9g00062 1165 SMART arm_5 1077 1117 IPR000225 GO:0005515
Vimu9g00062 1165 SMART arm_5 516 555 IPR000225 GO:0005515
Vimu9g00062 1165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 414 482 IPR013083 -
Vimu9g00062 1165 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 692 734 IPR000225 GO:0005515
Vimu9g00062 1165 Pfam U-box domain 416 482 IPR003613 GO:0004842|GO:0016567
Vimu9g00062 1165 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 167 1165 - -
Vimu9g00062 1165 Gene3D - 1031 1163 IPR011989 -
Vimu9g00062 1165 SMART Ubox_2 415 478 IPR003613 GO:0004842|GO:0016567
Vimu9g00062 1165 CDD RING-Ubox_PUB 416 465 IPR045210 -
Vimu9g00062 1165 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 165 270 IPR008808 -
Vimu9g00062 1165 Coils Coil 225 245 - -
Vimu9g00062 1165 ProSiteProfiles U-box domain profile. 411 485 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00062 Vimu-Chr9 790448 796560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00062 403 1165 U-box Gene Family AT1G76390 27.887 1.08e-60 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00062 - - gmx:100799969 1635.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00062 9 790448 796560 Vimu9g00062 9 790448 796560 ECH