Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00047 CCTCAGTTAGCAGCAAGTGTGAGAGTGTTACACAACATGGAATATACTTATTCAGAGGGTGCAGAGGCAGAAACTTACACCAGTAGCAGCACCACCCCATCAAGTGGCATGAGATCAAAGAAGAAAAGCAACAACACAAGAAGGTTCAGTGATGATCAAATCAAATCACTGGAAACCATGTTTGAGACAGAGTCAAGGTTAGAGCCCAGAAAGAAGTTGCAGCTGGCAAGAGACCTTGGATTGCAGCCAAGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCTAGGTGGAAGTCAAAGCAACTTGAGAGAGACTATGGTATACTACAATCCAATTACAACAGTTTAGCCTCACGTTTTGAAGCTCTCAAGAAGGAAAAACAAACATTACTAATTCAGTTGCAGAAGCTGAATCATCTAATGCAGAAGCCATTGGAGGCAGGTCAGAGTCGGACACAAGTTGAAGCAGCAAACAGCATGGACAGTGAATCAGAAAATGGAGGCACCATGAAATGTGAGCTCGAGGAAAAGCCTAGCCCATCAATAGAAAGATCAGAACATGCACACGGTGTTCTGTCTGATGATGATGCTAGCATAAAGGTGGAACACTTTGGCCTAGAAGATGAACATGGTCTCTTGAACTTTGCTGAGCATGCTGATGACTCCTTGACTTCACCGGAAGATTGGAGTGCTTTTGAATCCAGTGGTCTCTTAGGCCCAACGTCCAGTGATTACCAATGGTGGGACTTCTGGTCCTGA 759 0.4453 PQLAASVRVLHNMEYTYSEGAEAETYTSSSTTPSSGMRSKKKSNNTRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKLNHLMQKPLEAGQSRTQVEAANSMDSESENGGTMKCELEEKPSPSIERSEHAHGVLSDDDASIKVEHFGLEDEHGLLNFAEHADDSLTSPEDWSAFESSGLLGPTSSDYQWWDFWS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00047 252 ProSitePatterns 'Homeobox' domain signature. 75 98 IPR017970 GO:0000981|GO:0006355
Vimu9g00047 252 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 38 183 IPR045224 GO:0003700
Vimu9g00047 252 MobiDBLite consensus disorder prediction 21 40 - -
Vimu9g00047 252 ProSiteProfiles 'Homeobox' domain profile. 40 100 IPR001356 GO:0003677
Vimu9g00047 252 FunFam Homeobox-leucine zipper protein ATHB-7 27 100 - -
Vimu9g00047 252 SUPERFAMILY Homeodomain-like 25 102 IPR009057 -
Vimu9g00047 252 Coils Coil 120 140 - -
Vimu9g00047 252 MobiDBLite consensus disorder prediction 20 52 - -
Vimu9g00047 252 Pfam Homeobox associated leucine zipper 100 142 IPR003106 GO:0006355|GO:0043565
Vimu9g00047 252 PRINTS Lambda-repressor HTH signature 80 96 IPR000047 GO:0003677
Vimu9g00047 252 PRINTS Lambda-repressor HTH signature 71 80 IPR000047 GO:0003677
Vimu9g00047 252 Pfam Homeodomain 47 98 IPR001356 GO:0003677
Vimu9g00047 252 CDD homeodomain 47 101 IPR001356 GO:0003677
Vimu9g00047 252 Gene3D - 28 109 - -
Vimu9g00047 252 SMART HOX_1 43 104 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00047 Vimu-Chr9 583883 584858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00047 30 252 Homeobox Transcription Factor Family AT2G46680 49.407 3.25e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu9g00047 Homeodomain 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00047 K09338 - gmx:100797862 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00047 9 583883 584858 Vimu9g00047 9 583883 584858 ECH
Vimu2g01511 2 10467692 10468644 Vimu9g00047 9 583883 584858 PCT