LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu9g00042	ATGGGTCAGTGCTACGGCAAGTCCAATCTCACGCCGGAAAATGAGGTTACAGCGGCAGAGGGAGCCACAGTCGGCACCGCTATCGCGGTGGCTGGATCCGCTGACGTCCCGCTCTCTCCGCTGCCGGTGAAGGGAACGCCGGCGCGGGCGAGTCCCTGGCCCAGTCCATACCCACACGGTGGCGGTGTGACGCCGTCCCCAGCCAGAGGCACGCCGAGGAGATTTTTCCGGCGGTCTTTCGCGCCTCCCTCGCCTGCTAAGCACATAAGGGCGTCGTTGGCGAAGCGGCTCGGGCACGCAAAGACGCCGAAAGAGGGGCCGATCCCGGAGGAAGAAGCTGCGGGAGCGGTGGCGACGGAACAGTCGCTGGATAAGAGCTTTGGGTATGGTAAGAATTTTGGGGCGAAATATGAAATTGGGAAAGAAGTGGGTCGTGGGCATTTTGGTCATACTTGTTATGCTAAGGGGAAGAAGGGCGAACTCAAAGACCAGCCTGTTGCTGTTAAGATAATTTCCAAGGCGAAGCGTTTGGATTTGGACGATTCGGGGTTTGATCTCTGTTGTTTGATTGAACGCTCTGCGAGATTCTGGTTAGTTACTTTGTCGGCGGTTTTGGATGCTAGAATTCTCTTACATGCACGAGGCGTTGGCATAGTACAATACTCCGATCTCTTGGTGTTAAAAGCGCGTTTCTCTTTGTCGCTATTTGAGGCTGGGTTGGCCACCTTGCTGGCAGTTTTGGAAGCTAAAATTGTCTTGCATGTATTGTGTGAAGGTGGGGAGCTTCTTGACAGAATTTTGTCAAGGGGAGGAAAGTATTCAGAGGAGGATGCCAAGGTTATAGTTTTGCAGATTCTAAGTGTAGTTGCTTTTTGTCATCTTCAAGGTGTTGTGCACCGTGACCTTAAACCTGAGAATTTCCTCTTCACTTCGAGAAGTGAAGATGCTGACATGAAGCTTATTGATTTTGGTCTATCTGACTTCATCCGGCCAGATGAACGGTTGAATGACATTGTTGGGAGTGCTTATTATGTTGCACCTGAGGTCCTTCACCGGTCATATAGTCTGGAAGCCGATATATGGAGTATTGGTGTTATTGCCTATATCTTATTATGTGGAAGTCGACCTTTCTGGGCACGAACAGAATCTGGAATTTTTCGTGCAGTGCTTAGAGCTGATCCTAACTTTGATGATTTACCTTGGCCTACTGCCTCTGCAGAAGCCAAGGACTTTGTGAAACGGCTTCTAAACAAGGACTACAGGAAAAGAATGACAGCTGCACTTTCAAAAGCCTTGCCAGAGGATGAATTGCCCTACCTTAGGGCACAATTCAGATTGTTGGAACCAAACAGAGACGGACTCATCTCCCTTGACAATTTCAAAATGGCTCTTGTACAGAATGCAACTGAAGCAATGAGGGAATCAAGGGTTGTTGAGATCATAAATGCGATGGAGCCACTTGCCTATAGAAATATGGACTTTGAAGAATTTTGTGCAGCTGCAATCAGCACATACCAATTGGAAGCACATGAAAGGTGGGAAGACATTGCCTCAGCTGCATTTGAACACTTTGAGACAGAAGGCAACCGTCTGATATCTGTTGAAGAATTGGCCAGAGAGTTGAATCTTGGGCCTTCAGCTTATTCAACTCTGAAAGACTGGATAAGAAATAGTGATGGAAAGCTTAACTTACTTGGATATACAAAATTTTTGCATGGTGTGACTCTCCGTAGTTCAAACCCGAGACACAAGTAG	1755	0.4815	MGQCYGKSNLTPENEVTAAEGATVGTAIAVAGSADVPLSPLPVKGTPARASPWPSPYPHGGGVTPSPARGTPRRFFRRSFAPPSPAKHIRASLAKRLGHAKTPKEGPIPEEEAAGAVATEQSLDKSFGYGKNFGAKYEIGKEVGRGHFGHTCYAKGKKGELKDQPVAVKIISKAKRLDLDDSGFDLCCLIERSARFWLVTLSAVLDARILLHARGVGIVQYSDLLVLKARFSLSLFEAGLATLLAVLEAKIVLHVLCEGGELLDRILSRGGKYSEEDAKVIVLQILSVVAFCHLQGVVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSLEADIWSIGVIAYILLCGSRPFWARTESGIFRAVLRADPNFDDLPWPTASAEAKDFVKRLLNKDYRKRMTAALSKALPEDELPYLRAQFRLLEPNRDGLISLDNFKMALVQNATEAMRESRVVEIINAMEPLAYRNMDFEEFCAAAISTYQLEAHERWEDIASAAFEHFETEGNRLISVEELARELNLGPSAYSTLKDWIRNSDGKLNLLGYTKFLHGVTLRSSNPRHK	584

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu9g00042	584	Gene3D	Transferase(Phosphotransferase) domain 1	242	434	-	-
	Vimu9g00042	584	FunFam	CDPK-related kinase 1	430	502	-	-
	Vimu9g00042	584	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	297	309	IPR008271	GO:0004672\|GO:0006468
	Vimu9g00042	584	ProSiteProfiles	EF-hand calcium-binding domain profile.	435	470	IPR002048	GO:0005509
	Vimu9g00042	584	MobiDBLite	consensus disorder prediction	41	87	-	-
	Vimu9g00042	584	MobiDBLite	consensus disorder prediction	98	117	-	-
	Vimu9g00042	584	ProSitePatterns	Protein kinases ATP-binding region signature.	143	169	IPR017441	GO:0005524
	Vimu9g00042	584	MobiDBLite	consensus disorder prediction	47	61	-	-
	Vimu9g00042	584	FunFam	CDPK-related kinase 1	263	441	-	-
	Vimu9g00042	584	Gene3D	Phosphorylase Kinase; domain 1	115	231	-	-
	Vimu9g00042	584	Pfam	Protein kinase domain	256	427	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu9g00042	584	PANTHER	SERINE/THREONINE-PROTEIN KINASE	122	559	-	-
	Vimu9g00042	584	ProSiteProfiles	Protein kinase domain profile.	137	440	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu9g00042	584	SUPERFAMILY	Protein kinase-like (PK-like)	129	429	IPR011009	-
	Vimu9g00042	584	CDD	STKc_CAMK	136	427	-	-
	Vimu9g00042	584	SMART	serkin_6	137	440	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu9g00042	584	Gene3D	-	435	572	-	-
	Vimu9g00042	584	SUPERFAMILY	EF-hand	423	573	IPR011992	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu9g00042	Vimu-Chr9	500816	507616	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu9g00042	1	578	EF-hand Containing Proteins	AT3G50530	48.806	0.0	555

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Vimu9g00042		Pkinase	2.1e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu9g00042	K13412		-	gmx:100796256	850.506