Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu9g00042 | ATGGGTCAGTGCTACGGCAAGTCCAATCTCACGCCGGAAAATGAGGTTACAGCGGCAGAGGGAGCCACAGTCGGCACCGCTATCGCGGTGGCTGGATCCGCTGACGTCCCGCTCTCTCCGCTGCCGGTGAAGGGAACGCCGGCGCGGGCGAGTCCCTGGCCCAGTCCATACCCACACGGTGGCGGTGTGACGCCGTCCCCAGCCAGAGGCACGCCGAGGAGATTTTTCCGGCGGTCTTTCGCGCCTCCCTCGCCTGCTAAGCACATAAGGGCGTCGTTGGCGAAGCGGCTCGGGCACGCAAAGACGCCGAAAGAGGGGCCGATCCCGGAGGAAGAAGCTGCGGGAGCGGTGGCGACGGAACAGTCGCTGGATAAGAGCTTTGGGTATGGTAAGAATTTTGGGGCGAAATATGAAATTGGGAAAGAAGTGGGTCGTGGGCATTTTGGTCATACTTGTTATGCTAAGGGGAAGAAGGGCGAACTCAAAGACCAGCCTGTTGCTGTTAAGATAATTTCCAAGGCGAAGCGTTTGGATTTGGACGATTCGGGGTTTGATCTCTGTTGTTTGATTGAACGCTCTGCGAGATTCTGGTTAGTTACTTTGTCGGCGGTTTTGGATGCTAGAATTCTCTTACATGCACGAGGCGTTGGCATAGTACAATACTCCGATCTCTTGGTGTTAAAAGCGCGTTTCTCTTTGTCGCTATTTGAGGCTGGGTTGGCCACCTTGCTGGCAGTTTTGGAAGCTAAAATTGTCTTGCATGTATTGTGTGAAGGTGGGGAGCTTCTTGACAGAATTTTGTCAAGGGGAGGAAAGTATTCAGAGGAGGATGCCAAGGTTATAGTTTTGCAGATTCTAAGTGTAGTTGCTTTTTGTCATCTTCAAGGTGTTGTGCACCGTGACCTTAAACCTGAGAATTTCCTCTTCACTTCGAGAAGTGAAGATGCTGACATGAAGCTTATTGATTTTGGTCTATCTGACTTCATCCGGCCAGATGAACGGTTGAATGACATTGTTGGGAGTGCTTATTATGTTGCACCTGAGGTCCTTCACCGGTCATATAGTCTGGAAGCCGATATATGGAGTATTGGTGTTATTGCCTATATCTTATTATGTGGAAGTCGACCTTTCTGGGCACGAACAGAATCTGGAATTTTTCGTGCAGTGCTTAGAGCTGATCCTAACTTTGATGATTTACCTTGGCCTACTGCCTCTGCAGAAGCCAAGGACTTTGTGAAACGGCTTCTAAACAAGGACTACAGGAAAAGAATGACAGCTGCACTTTCAAAAGCCTTGCCAGAGGATGAATTGCCCTACCTTAGGGCACAATTCAGATTGTTGGAACCAAACAGAGACGGACTCATCTCCCTTGACAATTTCAAAATGGCTCTTGTACAGAATGCAACTGAAGCAATGAGGGAATCAAGGGTTGTTGAGATCATAAATGCGATGGAGCCACTTGCCTATAGAAATATGGACTTTGAAGAATTTTGTGCAGCTGCAATCAGCACATACCAATTGGAAGCACATGAAAGGTGGGAAGACATTGCCTCAGCTGCATTTGAACACTTTGAGACAGAAGGCAACCGTCTGATATCTGTTGAAGAATTGGCCAGAGAGTTGAATCTTGGGCCTTCAGCTTATTCAACTCTGAAAGACTGGATAAGAAATAGTGATGGAAAGCTTAACTTACTTGGATATACAAAATTTTTGCATGGTGTGACTCTCCGTAGTTCAAACCCGAGACACAAGTAG | 1755 | 0.4815 | MGQCYGKSNLTPENEVTAAEGATVGTAIAVAGSADVPLSPLPVKGTPARASPWPSPYPHGGGVTPSPARGTPRRFFRRSFAPPSPAKHIRASLAKRLGHAKTPKEGPIPEEEAAGAVATEQSLDKSFGYGKNFGAKYEIGKEVGRGHFGHTCYAKGKKGELKDQPVAVKIISKAKRLDLDDSGFDLCCLIERSARFWLVTLSAVLDARILLHARGVGIVQYSDLLVLKARFSLSLFEAGLATLLAVLEAKIVLHVLCEGGELLDRILSRGGKYSEEDAKVIVLQILSVVAFCHLQGVVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSLEADIWSIGVIAYILLCGSRPFWARTESGIFRAVLRADPNFDDLPWPTASAEAKDFVKRLLNKDYRKRMTAALSKALPEDELPYLRAQFRLLEPNRDGLISLDNFKMALVQNATEAMRESRVVEIINAMEPLAYRNMDFEEFCAAAISTYQLEAHERWEDIASAAFEHFETEGNRLISVEELARELNLGPSAYSTLKDWIRNSDGKLNLLGYTKFLHGVTLRSSNPRHK | 584 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu9g00042 | 584 | Gene3D | Transferase(Phosphotransferase) domain 1 | 242 | 434 | - | - | |
Vimu9g00042 | 584 | FunFam | CDPK-related kinase 1 | 430 | 502 | - | - | |
Vimu9g00042 | 584 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 297 | 309 | IPR008271 | GO:0004672|GO:0006468 | |
Vimu9g00042 | 584 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 435 | 470 | IPR002048 | GO:0005509 | |
Vimu9g00042 | 584 | MobiDBLite | consensus disorder prediction | 41 | 87 | - | - | |
Vimu9g00042 | 584 | MobiDBLite | consensus disorder prediction | 98 | 117 | - | - | |
Vimu9g00042 | 584 | ProSitePatterns | Protein kinases ATP-binding region signature. | 143 | 169 | IPR017441 | GO:0005524 | |
Vimu9g00042 | 584 | MobiDBLite | consensus disorder prediction | 47 | 61 | - | - | |
Vimu9g00042 | 584 | FunFam | CDPK-related kinase 1 | 263 | 441 | - | - | |
Vimu9g00042 | 584 | Gene3D | Phosphorylase Kinase; domain 1 | 115 | 231 | - | - | |
Vimu9g00042 | 584 | Pfam | Protein kinase domain | 256 | 427 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu9g00042 | 584 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 122 | 559 | - | - | |
Vimu9g00042 | 584 | ProSiteProfiles | Protein kinase domain profile. | 137 | 440 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu9g00042 | 584 | SUPERFAMILY | Protein kinase-like (PK-like) | 129 | 429 | IPR011009 | - | |
Vimu9g00042 | 584 | CDD | STKc_CAMK | 136 | 427 | - | - | |
Vimu9g00042 | 584 | SMART | serkin_6 | 137 | 440 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu9g00042 | 584 | Gene3D | - | 435 | 572 | - | - | |
Vimu9g00042 | 584 | SUPERFAMILY | EF-hand | 423 | 573 | IPR011992 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu9g00042 | Vimu-Chr9 | 500816 | 507616 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu9g00042 | 1 | 578 | EF-hand Containing Proteins | AT3G50530 | 48.806 | 0.0 | 555 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | CAMK_CDPK | Vimu9g00042 | Pkinase | 2.1e-44 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu9g00042 | K13412 | - | gmx:100796256 | 850.506 |