Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00042 ATGGGTCAGTGCTACGGCAAGTCCAATCTCACGCCGGAAAATGAGGTTACAGCGGCAGAGGGAGCCACAGTCGGCACCGCTATCGCGGTGGCTGGATCCGCTGACGTCCCGCTCTCTCCGCTGCCGGTGAAGGGAACGCCGGCGCGGGCGAGTCCCTGGCCCAGTCCATACCCACACGGTGGCGGTGTGACGCCGTCCCCAGCCAGAGGCACGCCGAGGAGATTTTTCCGGCGGTCTTTCGCGCCTCCCTCGCCTGCTAAGCACATAAGGGCGTCGTTGGCGAAGCGGCTCGGGCACGCAAAGACGCCGAAAGAGGGGCCGATCCCGGAGGAAGAAGCTGCGGGAGCGGTGGCGACGGAACAGTCGCTGGATAAGAGCTTTGGGTATGGTAAGAATTTTGGGGCGAAATATGAAATTGGGAAAGAAGTGGGTCGTGGGCATTTTGGTCATACTTGTTATGCTAAGGGGAAGAAGGGCGAACTCAAAGACCAGCCTGTTGCTGTTAAGATAATTTCCAAGGCGAAGCGTTTGGATTTGGACGATTCGGGGTTTGATCTCTGTTGTTTGATTGAACGCTCTGCGAGATTCTGGTTAGTTACTTTGTCGGCGGTTTTGGATGCTAGAATTCTCTTACATGCACGAGGCGTTGGCATAGTACAATACTCCGATCTCTTGGTGTTAAAAGCGCGTTTCTCTTTGTCGCTATTTGAGGCTGGGTTGGCCACCTTGCTGGCAGTTTTGGAAGCTAAAATTGTCTTGCATGTATTGTGTGAAGGTGGGGAGCTTCTTGACAGAATTTTGTCAAGGGGAGGAAAGTATTCAGAGGAGGATGCCAAGGTTATAGTTTTGCAGATTCTAAGTGTAGTTGCTTTTTGTCATCTTCAAGGTGTTGTGCACCGTGACCTTAAACCTGAGAATTTCCTCTTCACTTCGAGAAGTGAAGATGCTGACATGAAGCTTATTGATTTTGGTCTATCTGACTTCATCCGGCCAGATGAACGGTTGAATGACATTGTTGGGAGTGCTTATTATGTTGCACCTGAGGTCCTTCACCGGTCATATAGTCTGGAAGCCGATATATGGAGTATTGGTGTTATTGCCTATATCTTATTATGTGGAAGTCGACCTTTCTGGGCACGAACAGAATCTGGAATTTTTCGTGCAGTGCTTAGAGCTGATCCTAACTTTGATGATTTACCTTGGCCTACTGCCTCTGCAGAAGCCAAGGACTTTGTGAAACGGCTTCTAAACAAGGACTACAGGAAAAGAATGACAGCTGCACTTTCAAAAGCCTTGCCAGAGGATGAATTGCCCTACCTTAGGGCACAATTCAGATTGTTGGAACCAAACAGAGACGGACTCATCTCCCTTGACAATTTCAAAATGGCTCTTGTACAGAATGCAACTGAAGCAATGAGGGAATCAAGGGTTGTTGAGATCATAAATGCGATGGAGCCACTTGCCTATAGAAATATGGACTTTGAAGAATTTTGTGCAGCTGCAATCAGCACATACCAATTGGAAGCACATGAAAGGTGGGAAGACATTGCCTCAGCTGCATTTGAACACTTTGAGACAGAAGGCAACCGTCTGATATCTGTTGAAGAATTGGCCAGAGAGTTGAATCTTGGGCCTTCAGCTTATTCAACTCTGAAAGACTGGATAAGAAATAGTGATGGAAAGCTTAACTTACTTGGATATACAAAATTTTTGCATGGTGTGACTCTCCGTAGTTCAAACCCGAGACACAAGTAG 1755 0.4815 MGQCYGKSNLTPENEVTAAEGATVGTAIAVAGSADVPLSPLPVKGTPARASPWPSPYPHGGGVTPSPARGTPRRFFRRSFAPPSPAKHIRASLAKRLGHAKTPKEGPIPEEEAAGAVATEQSLDKSFGYGKNFGAKYEIGKEVGRGHFGHTCYAKGKKGELKDQPVAVKIISKAKRLDLDDSGFDLCCLIERSARFWLVTLSAVLDARILLHARGVGIVQYSDLLVLKARFSLSLFEAGLATLLAVLEAKIVLHVLCEGGELLDRILSRGGKYSEEDAKVIVLQILSVVAFCHLQGVVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSLEADIWSIGVIAYILLCGSRPFWARTESGIFRAVLRADPNFDDLPWPTASAEAKDFVKRLLNKDYRKRMTAALSKALPEDELPYLRAQFRLLEPNRDGLISLDNFKMALVQNATEAMRESRVVEIINAMEPLAYRNMDFEEFCAAAISTYQLEAHERWEDIASAAFEHFETEGNRLISVEELARELNLGPSAYSTLKDWIRNSDGKLNLLGYTKFLHGVTLRSSNPRHK 584
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00042 584 Gene3D Transferase(Phosphotransferase) domain 1 242 434 - -
Vimu9g00042 584 FunFam CDPK-related kinase 1 430 502 - -
Vimu9g00042 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
Vimu9g00042 584 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Vimu9g00042 584 MobiDBLite consensus disorder prediction 41 87 - -
Vimu9g00042 584 MobiDBLite consensus disorder prediction 98 117 - -
Vimu9g00042 584 ProSitePatterns Protein kinases ATP-binding region signature. 143 169 IPR017441 GO:0005524
Vimu9g00042 584 MobiDBLite consensus disorder prediction 47 61 - -
Vimu9g00042 584 FunFam CDPK-related kinase 1 263 441 - -
Vimu9g00042 584 Gene3D Phosphorylase Kinase; domain 1 115 231 - -
Vimu9g00042 584 Pfam Protein kinase domain 256 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00042 584 PANTHER SERINE/THREONINE-PROTEIN KINASE 122 559 - -
Vimu9g00042 584 ProSiteProfiles Protein kinase domain profile. 137 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00042 584 SUPERFAMILY Protein kinase-like (PK-like) 129 429 IPR011009 -
Vimu9g00042 584 CDD STKc_CAMK 136 427 - -
Vimu9g00042 584 SMART serkin_6 137 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00042 584 Gene3D - 435 572 - -
Vimu9g00042 584 SUPERFAMILY EF-hand 423 573 IPR011992 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu9g00042 Vimu-Chr9 500816 507616 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00042 1 578 EF-hand Containing Proteins AT3G50530 48.806 0.0 555
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu9g00042 Pkinase 2.1e-44 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00042 K13412 - gmx:100796256 850.506