Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00040 ATGGAGGAACTCATCATCTCCCCTTCCTCATCTTCCTCTTTGCTCACTCTACCCCATCAAAACCCAACACCATCTATTCAACAAAACCTCCAATTTCTCCTTCAAGCCCAACCCGATTGGTGGGTCTACGCCATTTTCTGGCAGGCTTCACACGACGACAATGGCAACCTTTTCCTCTCCTTCGGAGAAGGTCATTTCCAAGGCACCAAAGAAACTTCCCCTAAATTCTCAACCCCCGTTTCCACCAAGAAGTTCCCCAAAACCCCCACAACAGAAAACATTAACGATGCCGAGTGGTTCTACGTCATGTCGTTGACTCGAACGTTTCCCGTCAACAATTCTTCTTCTTCTTCTTCGACCTCTACCACTCCTTCCTCACTCCTTGGCAAATCTTTTGCTCTGGGCTCTGTGTTGTGGCTCAATAGCAAACACGAGCTCCAATTCTACAAGTGCGAGAGATCAAACGAGGCACAGTTACACGGGATCCAAACGTTGATCTCCATCCCCACACAAAACGGCGTCATCGAAATGGGATCCTACGACAGCATCAAACAAAACTGGAACCTCGTCCATCACGTCAAGTCTCTCTTCCAACCCCTCCCAGATCCGCTTCCCGTTCAACTCCTCAACGACCACACCATCTCCTTCGCTCACATCGGCGTCGTCGCCGGAATCCAAGAAACCAAAAAGCGAAAACAAACCCAAACACCACCCAACAATCAAAAGGACAGCTACGTAGACTCCGAACACTCTGATTCGGATTGTCCAACGCTGCCAACCACCTCCACCCCGACAGCCTCGGAGCCCAAAAAACGAGGCAGAAAACCTGTTCTCGGCCGCGAGACACCAATGAACCACGTGGAGGCTGAGCGGCAACGGAGGGAGAAGCTGAACCACCGCTTCTACGCGCTACGCGCGGTGGTTCCGAACGTTTCGAGGATGGACAAGGCTTCGTTGTTGTCCGACGCTGTCGCTTACATCAACGAGCTCAAAGCGAAGATTGAGTACTTGGAATCGCAGCAACAAAGAGAGGGTAATAAAAGAGTGAAGACAGAAATAATGGATACCATGGATAATCAGAGCACCGCCACTACCTCCACCATCGTAGACCAAGGCAGGCCTGGTCCTGGAGGCCCATGCCCATTTGGTCTCGAGATCGATGTGAAGATCGTGGGGCCTGATGCCATGGTGAGGGTGCAATCCGAAAATGCCAACCACCCCGGGGCAAGGCTAATGGGTGCACTGAGAGACCTAGAGTTCCAGGTTCATCACGCTAGCATGTCGTGCGTCAACGATCTCATGCTTCAGGACGTGGTGATCAATGTCCCTGAGGGAATGAGGAGCGAAGAGGGTCTTAAATCTGCCATTCTCACGAGGTTGGATCAGTGA 1389 0.5155 MEELIISPSSSSSLLTLPHQNPTPSIQQNLQFLLQAQPDWWVYAIFWQASHDDNGNLFLSFGEGHFQGTKETSPKFSTPVSTKKFPKTPTTENINDAEWFYVMSLTRTFPVNNSSSSSSTSTTPSSLLGKSFALGSVLWLNSKHELQFYKCERSNEAQLHGIQTLISIPTQNGVIEMGSYDSIKQNWNLVHHVKSLFQPLPDPLPVQLLNDHTISFAHIGVVAGIQETKKRKQTQTPPNNQKDSYVDSEHSDSDCPTLPTTSTPTASEPKKRGRKPVLGRETPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKAKIEYLESQQQREGNKRVKTEIMDTMDNQSTATTSTIVDQGRPGPGGPCPFGLEIDVKIVGPDAMVRVQSENANHPGARLMGALRDLEFQVHHASMSCVNDLMLQDVVINVPEGMRSEEGLKSAILTRLDQ 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00040 462 MobiDBLite consensus disorder prediction 1 20 - -
Vimu9g00040 462 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 282 343 IPR036638 GO:0046983
Vimu9g00040 462 MobiDBLite consensus disorder prediction 268 293 - -
Vimu9g00040 462 SMART finulus 287 336 IPR011598 GO:0046983
Vimu9g00040 462 PANTHER MYC 20 459 IPR045084 GO:0003700|GO:0006355
Vimu9g00040 462 Pfam Helix-loop-helix DNA-binding domain 285 330 IPR011598 GO:0046983
Vimu9g00040 462 Coils Coil 327 347 - -
Vimu9g00040 462 MobiDBLite consensus disorder prediction 228 293 - -
Vimu9g00040 462 Gene3D - 279 346 IPR036638 GO:0046983
Vimu9g00040 462 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 281 330 IPR011598 GO:0046983
Vimu9g00040 462 MobiDBLite consensus disorder prediction 228 244 - -
Vimu9g00040 462 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 27 197 IPR025610 -
Vimu9g00040 462 MobiDBLite consensus disorder prediction 251 267 - -
Vimu9g00040 462 CDD bHLH_AtAIB_like 279 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00040 Vimu-Chr9 473624 475012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00040 22 460 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 37.086 1.59e-73 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu9g00040 bHLH-MYC_N 1.2e-44 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00040 - K13422 var:108347008 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00040 9 473624 475012 Vimu9g00040 9 473624 475012 ECH