Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00033 ATGGGGAAGAAGGGAAGTGGTAGTTCGTGGTTAACTGCTGTCAAAAGGGCATTCAGATCTCCCACCAAAGACAGTGACAAAAGGAGTGGCAGAAGAAGAGAAGACTGTGATCAAGAAGAAGACGAAGAAAAGAAAAGGGAAAAGAGAAGATGGATTTTCAGAAAGACTCACATGAGTCAAGAAGGACTGAACAACAACAACACTCAACAAAAGTTAAAGCATGATGTGGCTGCAGCTGGTGGGGTTTCAAGGACAGACCAGGATCAGAAGCATGCACTTGCAGTGGCGGTGGCCACAGCAGAAGCTGCCATGGCGACCGCTCAGGCGGCGGTGGAGGTGGTAAGGTTGAACAAACCTGCTAGCCATGCAAGGGAACATTATGCTGCTGTTGTGATCCAAACAGCTTTCAGAGGGTATCTGGCCAGAAGAGCACTTCGTGCACTAAAGGGGTTGGTGAAGTTGCAAGCTTTGGTTAGGGGTCACAATGTTAGGAAGCAGGCAAAGATGACCCTTAGATGCATGCAGGCTTTGGTTAGAGTTCAAGCAAGAGTCCTTGACCAGCGCATAAGGTCTTCACTTGACGGTAGCAGAAAATCCACTTTCAGTGACACCGCCAGTGTTTGGGACTCTCGGTATCTTCAAGATATTTCAGATAGGAAATCAGTATCAAGAGAGGGGAGCAGCATTGCAGATGACTGGGATGAACGTCCACACACAGTTGAAGAAGTGAAGGCTATGTTGCAGCAGAGGAAGGAAGCTGCAATGAAGAGAGACAAGACCTTATCCCAAGCCTTTTCGCAACAGATTTGGAGGAATGGTAGGACATCATCAATTGGAAACGAAGATGAGTTGGAAGAGAGACCAAAATGGTTAGATCGGTGGATGGCGACAAAGCCATGGGAGAACAGAGGAAGAGCTTCAACTGATCAGAGAGACCCAATTAAGACTGTGGAGATTGATACATCTCAGCCATATTCGTATCTAGGAACCAATTACAGAAGATCACATCCAAATTATCAATATAACCCAAACCAACATCAACCACAAAGGCATTCCATTGGTTCACCACTCCATAGATCTCACCAAAATGGATCCCTTCACCAATCCCCTGCAACCCCTTCTCCTGCAAAATCAAGAACGATCCAAGTCCGGTCAGCAAGCCCTCGTTGCATCAGAGAAGACAGAAACTACCCCACTTCCCAAACACCAAGCTTGAGGTCCAATTACCATTACACAGGAAACTTGTACCAAAATGGAAGGGCTGTGGGAACTGGAACTAGTAGTAGTAGTAGTAATGGTGCTACACTGCCGAATTACATGGCGGCAACGGAGTCTGCAAAGGCTCGAATCCGGTCACAAAGCGCGCCGAGGCAGAGGCCATCGACACCAGAAAGGGACAGGGTTGGATCAGCAAAGAAAAGGCTTTCTTTTCCTGCTCCTGACCCTTATAGCGTGGGAGCGAGTTATGGAAATTACGGGCACAGTTTGAGGAGTCCAAGCTTCAAGAGTGTGAGTGGATCACACTTTGGGTTGGAGCAGCAGTCAAATTACTCCTCTTGCTGCACTGAAAGTCTTGGTGGTGGTGAGGTTTCTCCTTCTTCAACCGGTGACCTTAGGAGGTGGTTGAGATGA 1632 0.4767 MGKKGSGSSWLTAVKRAFRSPTKDSDKRSGRRREDCDQEEDEEKKREKRRWIFRKTHMSQEGLNNNNTQQKLKHDVAAAGGVSRTDQDQKHALAVAVATAEAAMATAQAAVEVVRLNKPASHAREHYAAVVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSLDGSRKSTFSDTASVWDSRYLQDISDRKSVSREGSSIADDWDERPHTVEEVKAMLQQRKEAAMKRDKTLSQAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDPIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPNQHQPQRHSIGSPLHRSHQNGSLHQSPATPSPAKSRTIQVRSASPRCIREDRNYPTSQTPSLRSNYHYTGNLYQNGRAVGTGTSSSSSNGATLPNYMAATESAKARIRSQSAPRQRPSTPERDRVGSAKKRLSFPAPDPYSVGASYGNYGHSLRSPSFKSVSGSHFGLEQQSNYSSCCTESLGGGEVSPSSTGDLRRWLR 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00033 543 ProSiteProfiles IQ motif profile. 125 153 IPR000048 GO:0005515
Vimu9g00033 543 MobiDBLite consensus disorder prediction 1 69 - -
Vimu9g00033 543 MobiDBLite consensus disorder prediction 19 49 - -
Vimu9g00033 543 MobiDBLite consensus disorder prediction 518 543 - -
Vimu9g00033 543 MobiDBLite consensus disorder prediction 301 316 - -
Vimu9g00033 543 SMART iq_5 147 168 IPR000048 GO:0005515
Vimu9g00033 543 SMART iq_5 124 146 IPR000048 GO:0005515
Vimu9g00033 543 Pfam Protein of unknown function (DUF4005) 387 492 IPR025064 -
Vimu9g00033 543 ProSiteProfiles IQ motif profile. 149 176 IPR000048 GO:0005515
Vimu9g00033 543 PANTHER IQ-DOMAIN 5-RELATED 1 479 - -
Vimu9g00033 543 MobiDBLite consensus disorder prediction 317 385 - -
Vimu9g00033 543 Pfam IQ calmodulin-binding motif 128 146 IPR000048 GO:0005515
Vimu9g00033 543 Pfam IQ calmodulin-binding motif 152 168 IPR000048 GO:0005515
Vimu9g00033 543 MobiDBLite consensus disorder prediction 444 482 - -
Vimu9g00033 543 MobiDBLite consensus disorder prediction 301 408 - -
Vimu9g00033 543 FunFam IQ-domain 11 124 175 - -
Vimu9g00033 543 Gene3D - 122 176 - -
Vimu9g00033 543 MobiDBLite consensus disorder prediction 394 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00033 Vimu-Chr9 384977 387246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00033 10 543 IQD Protein Family AT4G00820 58.528 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00033 - - gmx:100786729 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00033 9 384977 387246 Vimu9g00033 9 384977 387246 ECH