Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00032 ATGTCTCAACAAAAGCAAGCTCAGATGGTAGGTGGTAACAACCAGGAGCAATATAATGACACAACTTTTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAATTTGGAGAGATCTTGGAGGCTGTTGTGATCACTGATAAGAACACTGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCTGAGGCAGCCATGAGAGCATGTCAGAACCCATCTCCAGTTATTGATGGAAGAAGGGCTAACTGCAATCTTGCTTCTCTTGGTGCAAACAAGAACCGACCACCAACTTTTCAGCATGGTTCAGGACGGTTCAGGCCTCCACCACCTGCTTATCATGGTTCTTCATCTACTGCTACATTTTCCCATCAACCCCCTAGGCAATACACATTTCCTTATTCATCTTACGGGTAA 453 0.4503 MSQQKQAQMVGGNNQEQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTFQHGSGRFRPPPPAYHGSSSTATFSHQPPRQYTFPYSSYG 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00032 150 MobiDBLite consensus disorder prediction 126 140 - -
Vimu9g00032 150 Gene3D - 1 117 IPR012677 -
Vimu9g00032 150 PANTHER BOULE-RELATED 9 146 - -
Vimu9g00032 150 FunFam RNA-binding protein 24-B isoform X1 11 117 - -
Vimu9g00032 150 MobiDBLite consensus disorder prediction 102 140 - -
Vimu9g00032 150 SUPERFAMILY RNA-binding domain, RBD 12 127 IPR035979 GO:0003676
Vimu9g00032 150 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Vimu9g00032 150 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Vimu9g00032 150 CDD RRM_RBM24_RBM38_like 24 99 - -
Vimu9g00032 150 SMART rrm1_1 25 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00032 Vimu-Chr9 372413 373307 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00032 20 100 C2H2 Transcription Factor Family AT2G19380 44.444 3.29e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00032 - - pvu:PHAVU_010G118600g 302.367