Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00031 ATGCCGGAAAACATGAGCATATCTGTCAATGGACAATCTCAAGTCCCACCTGGCTTCAGGTTCCATCCAACCGAGGAGGAGCTTCTTCAGTACTACTTGAGAAAGAAGGTCTCTTACGAGAAGATTGACCTCGATGTCATTCGTGATGTTGATCTCAACAAGCTCGAGCCATGGGATATTCAAGAGAAATGCAAAATAGGAACCACTCCGCAGAATGATTGGTACTTCTTCAGCCACAAAGATAAGAAGTACCCCACAGGAACTCGCACCAATCGCGCAACTGCTGCTGGATTCTGGAAGGCCACTGGCCGTGACAAGGTCATTTACAGCAACGGAAAGAGGATTGGAATGAGAAAGACTCTGGTTTTCTACAAAGGAAGAGCCCCACACGGCCAGAAATCTGACTGGATCATGCATGAATACAGACTCGACGACAACACCACCGGCGACACCAATATCGTGTCGAATGTGATGGGGGACGGCGGTCAAGAGGAAGGGTGGGTGGTGTGTAGGATATTCAAGAAGAAGAACAACCTGAAAACCCTAGACAGCCCGTTAGGTTCGGGAGAAGGTAGAAGGAGCCACTTGTTCGAGTCGTGCGACGAGGGAGCTTTGGAGCAAATACTTCAGCAAATGGGAAGGGGTTGCAAGGAAGAGAGCAGCTACGAGGGAAGCTACGGCTATGGAAGGTTGGGAAGGGGTTACGAGACAGGTGTGAACAATGACAGGTTCATGAAGCTGCCGAGCCTAGAGAGCCCAAAATCCACAAGCATGGAGAGTCAGCAGAACAACAACAGCAACAGTAATAATGGTGATAATAACAACGAGCAGAACAATAATGGGTACCATCCCATTATTCCAGCAGACATGGGGACGGACAACGAAGGGTCATTCGCAACCCACCAGGTGAGTGGTGGTGACCCCAACATGGTTCACCCGATGGAGCCATCATCAGGTGGTGGAGGCCTCACCAACTGGGCTGCCCTGGACCGTTTGGTTGCCTCTCAGCTCAATGGCCAAACCGAGGCCTCTAGGCACTTCGCATGCTTCAACGACCCCACCATCGCCTACTGCACTCCCCACCATGATCTCCCATTGCCAACCCTCCGATCCTCATCAAATCCTTCATCAAACACCACCCTCACCAGACCTTCCGCTGCACCCGCATACATCAACCCCGCTCACGACTTCGCCAGCGAGATTGACCTCTGGAACTTCACCCGCTCCACCTCCGAACCTCTCTGCCACGTCTCCAACACCTCACTCTAG 1269 0.5185 MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTGDTNIVSNVMGDGGQEEGWVVCRIFKKKNNLKTLDSPLGSGEGRRSHLFESCDEGALEQILQQMGRGCKEESSYEGSYGYGRLGRGYETGVNNDRFMKLPSLESPKSTSMESQQNNNSNSNNGDNNNEQNNNGYHPIIPADMGTDNEGSFATHQVSGGDPNMVHPMEPSSGGGGLTNWAALDRLVASQLNGQTEASRHFACFNDPTIAYCTPHHDLPLPTLRSSSNPSSNTTLTRPSAAPAYINPAHDFASEIDLWNFTRSTSEPLCHVSNTSL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00031 422 MobiDBLite consensus disorder prediction 250 282 - -
Vimu9g00031 422 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Vimu9g00031 422 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 273 - -
Vimu9g00031 422 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Vimu9g00031 422 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
Vimu9g00031 422 MobiDBLite consensus disorder prediction 245 296 - -
Vimu9g00031 422 FunFam NAC domain-containing protein 24 179 - -
Vimu9g00031 422 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00031 Vimu-Chr9 334170 336282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00031 1 421 NAC Transcription Factor Family AT2G46770 52.874 1.39e-138 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu9g00031 NAM 3.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00031 - - gmx:100793308 655.21