Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00027 ATGGGTGGTGGTAACATCAATTCAAGTGAACACATTGATACAACTTTTACCAAAATCTTTGTTGGAGGTTTAGCTTGGGAGACTCAAAGGGACACAGTGAGAAGGTATTTTGAGCAGTTTGGAGAGATTTTAGAGGCTGTTGTTATCACAGATAAGAACACTGGAAGATCCAAGGGTTATGGTTTTATCACATTCAAGGATCCTGAGGTAGCAATGAAAGCAGTTCAAAACCCATATCCAATAATTGATGGACGGAAGACAAATTGCAATATTGCATCTATTGGTGCAAACAAGAATTGCAGACAGGCTCCACAACATGGTTGGTTTAGAGAAGCACCTGGTTTATTGGCTTCACCTGTTTATCATGATCCTTTCTCTACATTTTTCCATCAAAACAATGGGCAATACACATTTCCTAGTTCAACTTTTGGCAGATATATTCAAACTTCACATGACATGATGTACCCGATGATGAACTGTTATGGAGTACTTGGAGAGCAACAGTTCTCAACTTACTACCCTTACATTGGGCCATCTGAACCTATAGGATTGTATGCAAACAATATCGAAGCTCAAGGTTTTGGATTCCATTATCCCCAAATGATGCATTCTCCAGTTATTCCTAGGCATTATGGCTCACCTGGTATCCTTAGATTTCCTTCGTCAGTGGAAAGGCCAACTATTAGTGCAGTTATCAAATTTAAGCAAGATTGCATTAAAAGGAAGAATCATGTAACAGTTACCAGAACTGCAACAAAAAGAGAGATACTAAGAACATGTGCAGATGCTTCACAAACCAGTGAAACAACTTCTGAACAAGATTCTTCAGCTGAATCTTCACATAAATAA 849 0.3852 MGGGNINSSEHIDTTFTKIFVGGLAWETQRDTVRRYFEQFGEILEAVVITDKNTGRSKGYGFITFKDPEVAMKAVQNPYPIIDGRKTNCNIASIGANKNCRQAPQHGWFREAPGLLASPVYHDPFSTFFHQNNGQYTFPSSTFGRYIQTSHDMMYPMMNCYGVLGEQQFSTYYPYIGPSEPIGLYANNIEAQGFGFHYPQMMHSPVIPRHYGSPGILRFPSSVERPTISAVIKFKQDCIKRKNHVTVTRTATKREILRTCADASQTSETTSEQDSSAESSHK 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00027 282 SMART rrm1_1 18 90 IPR000504 GO:0003723
Vimu9g00027 282 Gene3D - 9 100 IPR012677 -
Vimu9g00027 282 PANTHER BOULE-RELATED 11 210 - -
Vimu9g00027 282 MobiDBLite consensus disorder prediction 262 282 - -
Vimu9g00027 282 CDD RRM_RBM24_RBM38_like 17 92 - -
Vimu9g00027 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 77 IPR000504 GO:0003723
Vimu9g00027 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Vimu9g00027 282 SUPERFAMILY RNA-binding domain, RBD 11 93 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00027 Vimu-Chr9 260083 261516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00027 6 93 C2H2 Transcription Factor Family AT2G19380 40.909 3.27e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00027 - - gmx:100786226 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00027 9 260083 261516 Vimu9g00027 9 260083 261516 ECH