Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00022 ATGCCACATACCCTTTTTCACACTTTCCTTACACCACCTTCTTCTTATGTGCTACCCTTCAAACTGTACAAACCCCAAGTGAAACGATTCGTTTTACATTTCGGGCTTCCAAGGCGTTCCCGCACATCTCCAGAACCTTCTTCATCGTCTTCTTCTTTCTCTCCGCAGAGGAAAACCAGGGAGGTGGTTGAAGAACGGATTAATGGAGAAGAATCTGTTTACCCTCAAAAAGGTGATGGTTTTGTGGATGAAGAAGATAACCAAAGGCTTGGAAAATCGTGTGAAGTGTACGTGTGCAACCTCCCCAGAAGCTGTGATGCAGCATACTTGCTTGACTTGTTCAGGCCATATGGGACCATTCTTTCTGTTGAGGTTTGCCGAAATGATGAGACTAATGAAAGTAAGGGGTGTGGTTACGTGACACTGGGATCTGTATACTCAGCAAGAAATGCAGTTGCTACATTGGATGGATCGGATGTTGGTGGGCGCGAAATGAGGGTTAGATTTTCAATTGAGGTGAATTCTAGAAGGAGGGGTTTTAATAAAGCGAACTCTTCCACCAAGAGGATCTTATACTATGAATCTTCTCATAAGCTGTATGTTGGCAATCTTCCTAGGACAATGAGACCTGAACAGCTGAGAGATCACTTTAGCAGATTTGGAAATATAGTTGGTGCTAGAGTATTGCTTGATTTTAAACAAGGGAAAAGTCGAGCATATGCCTTTCTCTCCTTTCAATCAGACGCAGAACGTGATGCAGCAATGTCTCTCAATGGAACAGAATTTTATGGTCGAACACTAATAGTTAAAGAGGGTGTTGAGAGGACAGACCCTTTAACTGAAGCTTCAGTGTCTGCATAA 861 0.4297 MPHTLFHTFLTPPSSYVLPFKLYKPQVKRFVLHFGLPRRSRTSPEPSSSSSSFSPQRKTREVVEERINGEESVYPQKGDGFVDEEDNQRLGKSCEVYVCNLPRSCDAAYLLDLFRPYGTILSVEVCRNDETNESKGCGYVTLGSVYSARNAVATLDGSDVGGREMRVRFSIEVNSRRRGFNKANSSTKRILYYESSHKLYVGNLPRTMRPEQLRDHFSRFGNIVGARVLLDFKQGKSRAYAFLSFQSDAERDAAMSLNGTEFYGRTLIVKEGVERTDPLTEASVSA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00022 286 Gene3D - 37 175 IPR012677 -
Vimu9g00022 286 Gene3D - 176 278 IPR012677 -
Vimu9g00022 286 MobiDBLite consensus disorder prediction 38 61 - -
Vimu9g00022 286 SMART rrm1_1 198 270 IPR000504 GO:0003723
Vimu9g00022 286 SMART rrm1_1 95 168 IPR000504 GO:0003723
Vimu9g00022 286 MobiDBLite consensus disorder prediction 41 57 - -
Vimu9g00022 286 SUPERFAMILY RNA-binding domain, RBD 194 276 IPR035979 GO:0003676
Vimu9g00022 286 SUPERFAMILY RNA-binding domain, RBD 89 182 IPR035979 GO:0003676
Vimu9g00022 286 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 45 177 - -
Vimu9g00022 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 172 IPR000504 GO:0003723
Vimu9g00022 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 274 IPR000504 GO:0003723
Vimu9g00022 286 PANTHER OS02G0815200 PROTEIN 42 270 - -
Vimu9g00022 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 267 IPR000504 GO:0003723
Vimu9g00022 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00022 Vimu-Chr9 219034 220526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00022 93 277 Eukaryotic Initiation Factors Gene Family AT2G36660 28.877 1.02e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00022 - - vra:106780336 535.028