Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00021 ATGGCTGAGTTGAGTAGTACGATGCAAGAGCACGGGACGGGCAACAATGGCGATCGCTCTGCAGAGGTGGTTCGGTGGGAGAGAGTCTTGCTTGTAGAAGCTGATCATTCCACTCGGCAAATCATCGCTGCGCTTCTTCGCAAATGCAGTTACACAGTTATCGCGGTTCCAGACGGATTAAAGGCATGGGAGTTGTTGAAGAAGAAGGCGTCCGAGCTAGATCTCATAATAACTGAAGTGGATCTGCCAGCAATATCTGGATTTGCCCTTCTTTCTTTAATCATGGAGCATGAAATTTGTAAAAACATTCCTGTCATAATGATGTCTTCTCATGATTCTGTAAGCATGGTTTTGAAATGCATGCTAAAAGGGGCAGCTGATTTTCTTATAAAACCTATTCGGAGGAATGAACTAGGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTAGTAGCACTCCTGCTCCAAATACAACATTTTCACCAAAAAGTCTTAAAACTACCTCCGAAGACAATTCTGCAAGCAATAAATCTAGTGGTTCCGTTGCCTCCTCTAAGGAAAACAACGAATACAGTGAGAGATTAAGTGAGGCTCAAGACGTGCCCCAGCTGAAAAGGTCTAAACAGAAGAAAATTGATTTGAAGCATGAAAAGTTTGCCAGATTTGAAAGTGAATCAACTAAGATGGATAATGAAACAAGAGGGTGCGACAAAACTTTTGAATCGGCAGATTTAAGGCCAGAACAAGACCATGGCTGTGCTGATACTGAAATTGAGGTTGAAATCTTAAAATCTGATTTAGGCATAGGAGATTCTAATATTAGTACTGAGTTGCATGGATGCAGTGATGAAGGGGTGAAACCTATTAAAGGAGCTATTGACTTGATTGCAACATTTGGAAATCTTCCAAAGCACCCTGATGAAAATTGTAGTCTTAATGGTGGTAATACAACCATGTTTGATGGTGTTACGCAATTGGAACTTTCTTTACGAAGTGATTTTCCTGGAAATTCATGTAAACAAGCAAGCGAAGCAACTGAGGATTCTCAAAGATTGAACCATTCAAACACCTCTGCATTTTCTTGGTATAGTAATAGTAAATTAGTGCACCCTCTTTTTCGAACACCATCAATTACATCCGCCGAAGTAAACAACCTCAGTTGGGATTCTCATGAATCCCATAAATTGTCTCGAACTACTTCTGGAAATTGTTGTCAGTATGGTGGCTCAAATAAAAACCTGGAGAATATGATCGGTACGGTCATTGATCAGTATGGACAAGTTACACCAAAATTATCAAACAGTCAATGTGGAATGTTACCTGTTTCAGGGGTTATTTCCGATCTTAAGTTCAAGGGACATGGTAATGTTTTCACTTCAGTGTTCTACGCATCATCTGGTACTCACCCTGTGTGGAGTCCGAAACCAGTCTGCCAGAACGAGAGTTCTCCCTTTCCCACAAGTACCTCCTCCCAGTCCAATCCTGAAAGTCACAACTCTGACCAATATCATGAATATTCCAATGATGCTACTTGTCTTAATCAAAATGTAAAGGAAGACACTGATTTGGATCAAGCAAGGCGTGATTCTCCTGCTGCTGATCAGAGTGCTGGTAATAGTTTATGCCATGATGCTTCATATCATGTGAACAGTAGTGCGTATGGAAGCATGGACAGTGGAAATGATGGGCATGCTACTTCAGCTGTAGTATCCAAGAACAACCCAGAAGTTTTCAGTGATAGTGTTTGTCATAATTATGATGGGTCTCGAGGCACAGAATCTCATCGCACTAGTCAAAGAGAAGCAGCTCTAACTAAGTTTCGACTGAAGCGGAAAGAGCGATGCTTCGAGAAAAAGGTTCGATATCAAAGCCGGAAAAGGCTGGCAGAGCAGCGGCCTCGGGTCAAAGGGCAGTTTGTACGCCAAGTACACAATGATCATCCAGTTGCTGATGCCGGTGGTGATTCATGA 1971 0.4211 MAELSSTMQEHGTGNNGDRSAEVVRWERVLLVEADHSTRQIIAALLRKCSYTVIAVPDGLKAWELLKKKASELDLIITEVDLPAISGFALLSLIMEHEICKNIPVIMMSSHDSVSMVLKCMLKGAADFLIKPIRRNELGNLWQHVWRRHASSTPAPNTTFSPKSLKTTSEDNSASNKSSGSVASSKENNEYSERLSEAQDVPQLKRSKQKKIDLKHEKFARFESESTKMDNETRGCDKTFESADLRPEQDHGCADTEIEVEILKSDLGIGDSNISTELHGCSDEGVKPIKGAIDLIATFGNLPKHPDENCSLNGGNTTMFDGVTQLELSLRSDFPGNSCKQASEATEDSQRLNHSNTSAFSWYSNSKLVHPLFRTPSITSAEVNNLSWDSHESHKLSRTTSGNCCQYGGSNKNLENMIGTVIDQYGQVTPKLSNSQCGMLPVSGVISDLKFKGHGNVFTSVFYASSGTHPVWSPKPVCQNESSPFPTSTSSQSNPESHNSDQYHEYSNDATCLNQNVKEDTDLDQARRDSPAADQSAGNSLCHDASYHVNSSAYGSMDSGNDGHATSAVVSKNNPEVFSDSVCHNYDGSRGTESHRTSQREAALTKFRLKRKERCFEKKVRYQSRKRLAEQRPRVKGQFVRQVHNDHPVADAGGDS 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00021 656 CDD psREC_PRR 29 132 - -
Vimu9g00021 656 MobiDBLite consensus disorder prediction 151 212 - -
Vimu9g00021 656 Pfam Response regulator receiver domain 29 138 IPR001789 GO:0000160
Vimu9g00021 656 MobiDBLite consensus disorder prediction 190 212 - -
Vimu9g00021 656 Pfam CCT motif 600 642 IPR010402 GO:0005515
Vimu9g00021 656 MobiDBLite consensus disorder prediction 474 504 - -
Vimu9g00021 656 ProSiteProfiles CCT domain profile. 600 642 IPR010402 GO:0005515
Vimu9g00021 656 MobiDBLite consensus disorder prediction 151 189 - -
Vimu9g00021 656 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 347 IPR045279 GO:0009736
Vimu9g00021 656 SMART REC_2 27 142 IPR001789 GO:0000160
Vimu9g00021 656 Gene3D - 27 249 - -
Vimu9g00021 656 ProSiteProfiles Response regulatory domain profile. 28 146 IPR001789 GO:0000160
Vimu9g00021 656 MobiDBLite consensus disorder prediction 581 602 - -
Vimu9g00021 656 SUPERFAMILY CheY-like 28 153 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00021 Vimu-Chr9 208413 214173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00021 563 644 Response Regulator Gene Family AT5G24470 54.878 1.62e-19 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vimu9g00021 Response_reg 3.3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00021 K12130 - gmx:100791698 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00021 9 208413 214173 Vimu9g00021 9 208413 214173 ECH
Vimu10g00076 10 449974 455969 Vimu9g00021 9 208413 214173 PCT