Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00017 ATGGGTTTCTTTGGAGACCCCTTGGGACTGAATTGTTTGGACCAAGTTCTGGTTGTCGAAGAAACCCTGAGACTAGAAGAGGAAGAACAGCTTCTGATATCAAGTTTAGAGGACAAGATGCCTTTTCTTCAGATGCTTCAGAGTGTGGAATCCCCACAGTTTTTCCCTTTGAAAGAACCAAACTTTCAAACACTTCTGAGGCTGCAGCACATTAAGAAACCATGGGAGGGAATGACCTATGTTCCAAGAATGGAAGCACAAGTTCAAGCAGCATTGGAGCTAGAGAGTTGTGTGACACATGACATGTTGGAGATGCAGTCACCGGTGAAGTCAGAAAGCAATGAGCTCCAACACCCACTTTCATTTTCGTGTGTTGAGAAAGTGAGCTATGAGTGCAATCAGGAACCACACAAAGTATCACAATCCTGCCCAAAGTCTCAGCCAGCAACCACAAGGGAAAGGCGAAAGAGAAAGAGAACAAGGCCAAGCAAGAACACGGAAGATGTGGAGAACCAACGCATGACCCACATTGCTGTTGAACGCAACCGCCGGCGCCAAATGAATGACCATCTCAGTGTTCTTAGGTCCCTCATGCCTCCTTCCTATATTCAAAAGGGTGACCAAGCCTCAATAATTGGTGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAGTCCCTTGAGGCACAAAAAAGGATGAGAAAGAATGAAGAGGGAGGTGGTTCTTCTTCCACGGTGTTTTGTAAGCCCCCTCCAACACCGTCATCTTCATCACCACATGGCTATGGAATGAGGTCATCAACTAGTGAGGAAGTGAGCTGTGGAGATGAGATGAAGGCAGAAAACAAGTCAGAGGCAGCAGATATAAAAGTGACCTTGATTCAAACCCATGTGAACTTGAAAATTGAGTGTCAAAGGAAACCAGGACAATTGATAAAGGTCATTGTTGCTTTGGAGGACCTCAGGCTAACCATTCTGCACCTCAACATCACCTCCTCAGAGACTTCTGTCCTTTACTCCCTCAATCTCAAGATTGAAGAAGGCTGTAGCCTACGTTCAGCAAGTGACATTGCAGAAGCAGTTCATCATATATTCAACTTCATTAATGGTAGCTAG 1122 0.4528 MGFFGDPLGLNCLDQVLVVEETLRLEEEEQLLISSLEDKMPFLQMLQSVESPQFFPLKEPNFQTLLRLQHIKKPWEGMTYVPRMEAQVQAALELESCVTHDMLEMQSPVKSESNELQHPLSFSCVEKVSYECNQEPHKVSQSCPKSQPATTRERRKRKRTRPSKNTEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQKGDQASIIGGAIDFVKELEQLLQSLEAQKRMRKNEEGGGSSSTVFCKPPPTPSSSSPHGYGMRSSTSEEVSCGDEMKAENKSEAADIKVTLIQTHVNLKIECQRKPGQLIKVIVALEDLRLTILHLNITSSETSVLYSLNLKIEEGCSLRSASDIAEAVHHIFNFINGS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00017 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 222 IPR011598 GO:0046983
Vimu9g00017 373 Pfam Helix-loop-helix DNA-binding domain 172 223 IPR011598 GO:0046983
Vimu9g00017 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 239 IPR036638 GO:0046983
Vimu9g00017 373 MobiDBLite consensus disorder prediction 236 271 - -
Vimu9g00017 373 SMART finulus 177 228 IPR011598 GO:0046983
Vimu9g00017 373 PANTHER TRANSCRIPTION FACTOR FAMA 110 367 IPR044283 GO:0003700|GO:0010052
Vimu9g00017 373 Coils Coil 219 239 - -
Vimu9g00017 373 CDD bHLH_AtFAMA_like 174 247 - -
Vimu9g00017 373 Gene3D - 162 243 IPR036638 GO:0046983
Vimu9g00017 373 MobiDBLite consensus disorder prediction 135 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00017 Vimu-Chr9 180704 182552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00017 30 372 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 43.678 5.35e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu9g00017 HLH 8.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00017 - - gmx:100789928 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00017 9 180704 182552 Vimu9g00017 9 180704 182552 ECH