Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00015 ATGGCTCCATCAGAGGAAATCAATAACGGTGAAGCCATGCAACTTAAGCACGTTGAAGAAGAGCAAGATGGCCTCTTCTTTGCCCTGAACATGGTGTCTAGTATGGCGTTCCCTCTTTCGGTTAAGACAGCGAATGAGCTCGGTATCTTTGACATCATGGCCAAAGCAGGTGAAGGTGCCAAGCTCTCAGCAGAAGAGATTACAGAAAAAATTGGCATAAAGAACCCACAAGCACCAACTATGGTGGATCGGATTCTGAGGCTGTTGGCCAGTCACTCTATGCTATCTTCATGTCTTGGTGAAGAAGGCCACAATTCTGGCAAGAGGCTCTATAGCCTCACCTATGCATCCAAGTACTTTGTTTCTGATTCTGATGGTGTTTCATTTGGAGCTTCCTTAGACTTGATTCTTGGCAAGGTCTTCTTGGATAGCTGGACTGAACTGAAAGGAGCCATCGCGGAAGGTGGAATAGCATTCGACAGGGTTTATGGGATGAACCCGTTTGAGTATCAAGCAGTGGATCCTACGTACAATGATGTTTTCAACAAAGCTATGTTCAACATTACCACCATAATCACAAACAGGATTCTTGAGCTCTACGATGGTTTCAAGAACATCAACAGGCTTGTGGATGTTGGTGGTGGTCTTGGGATCAATCTAAAACTCATCACTTCTAAATATCCCAATGTTCAAGGTGTTAATTTTGACTTGCCACACGTCATACAACATGCCCCTACCTACCCTGGTGTGGAACATGTAGCAGGAGATATGTTTGAGAGTGTTCCTAATGGAGACGCCATTTTTATGAAGTGGATTCTTCATGATTGGGGTGATGAAGAGTGTGTGAAGTTGCTGAAGAACTGCTACAAAGCTATTCCGAGTGATGGAAAAGTGATTGTTGTGGATTTGATTGTTCCTGCTTTGCCAGACAGTACAGTTATTGCGAGGAATGGTTTTCAAGCTGACCTATTGATGATGGCTCAAAATCCAGGAGGGAAAGAGAGAACACAAAATGAGTTCATGGAATTGGCATTATCTTCTGGATTCAGTGGCATCAGATTCGTCTGCTTTGTCTCTGGCTTCTGGATTATGGAGTTTTTCAAGTAG 1107 0.4372 MAPSEEINNGEAMQLKHVEEEQDGLFFALNMVSSMAFPLSVKTANELGIFDIMAKAGEGAKLSAEEITEKIGIKNPQAPTMVDRILRLLASHSMLSSCLGEEGHNSGKRLYSLTYASKYFVSDSDGVSFGASLDLILGKVFLDSWTELKGAIAEGGIAFDRVYGMNPFEYQAVDPTYNDVFNKAMFNITTIITNRILELYDGFKNINRLVDVGGGLGINLKLITSKYPNVQGVNFDLPHVIQHAPTYPGVEHVAGDMFESVPNGDAIFMKWILHDWGDEECVKLLKNCYKAIPSDGKVIVVDLIVPALPDSTVIARNGFQADLLMMAQNPGGKERTQNEFMELALSSGFSGIRFVCFVSGFWIMEFFK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00015 368 SUPERFAMILY "Winged helix" DNA-binding domain 20 123 IPR036390 -
Vimu9g00015 368 FunFam Caffeic acid 3-O-methyltransferase 7 120 - -
Vimu9g00015 368 Gene3D Vaccinia Virus protein VP39 121 368 IPR029063 -
Vimu9g00015 368 Pfam O-methyltransferase domain 145 350 IPR001077 GO:0008171
Vimu9g00015 368 Pfam Dimerisation domain 40 90 IPR012967 GO:0046983
Vimu9g00015 368 PIRSF O-mtase 6 368 IPR016461 GO:0008168
Vimu9g00015 368 CDD AdoMet_MTases 208 305 - -
Vimu9g00015 368 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 366 IPR029063 -
Vimu9g00015 368 PANTHER O-METHYLTRANSFERASE 31 354 IPR016461 GO:0008168
Vimu9g00015 368 FunFam Caffeic acid O-methyltransferase 121 368 - -
Vimu9g00015 368 Gene3D - 8 120 IPR036388 -
Vimu9g00015 368 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 368 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00015 Vimu-Chr9 157262 159717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00015 14 368 Monolignol Biosynthesis Gene Families AT5G54160 50.000 1.20e-129 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00015 K13066 - var:108346436 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00015 9 157262 159717 Vimu9g00015 9 157262 159717 ECH
Vimu10g00074 10 442317 444166 Vimu9g00015 9 157262 159717 PCT