Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00013 ATGGTGTCTAGTGTGGCGTTCCCTCTTTCGGTTAAGAAAGCGAATGAGCTCGGTATCTTTGACATCATGGCCAAAGCAGCTGAAGGTGCCAAGCTCTCAGCAGAAGAGATTACAGAAAAAGTTGGCATAAAAAAGAATCCACAAGCACCGACTATGGTGGATCGGATTCTGAGGCTGTTGGCCAGTCACTCCATGTTATCTTCATGTCTTGGTGAAGAAGGCCAAAATTCTGGCAAGAGGCTCTATAGTCTCACCTATGCATCCAAGTACTTTGTTTCTGATCCTGATGGTGTCTCGTTCCGAGCTTCCTCGAACTTGATTCTTGGCAAGGTCAGTTTTTTTATATGTGATGTGTGCATGTTTTTTTATATGTGA 375 0.44 MVSSVAFPLSVKKANELGIFDIMAKAAEGAKLSAEEITEKVGIKKNPQAPTMVDRILRLLASHSMLSSCLGEEGQNSGKRLYSLTYASKYFVSDPDGVSFRASSNLILGKVSFFICDVCMFFYM 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00013 124 SUPERFAMILY "Winged helix" DNA-binding domain 2 94 IPR036390 -
Vimu9g00013 124 Pfam Dimerisation domain 10 61 IPR012967 GO:0046983
Vimu9g00013 124 PANTHER O-METHYLTRANSFERASE 2 99 IPR016461 GO:0008168
Vimu9g00013 124 FunFam Caffeic acid 3-O-methyltransferase 1 91 - -
Vimu9g00013 124 Gene3D - 4 119 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00013 Vimu-Chr9 150569 150943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00013 1 92 Monolignol Biosynthesis Gene Families AT1G77530 44.330 1.52e-18 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00013 K13066 - var:108346436 192.971