Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00011 TTGCCGGAAAATGAGCCCTCCGACGAGTGTCCGGTGATGATCGCTCACGTGAGAGGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAATGTCATGGTTTCGTTCCGAGTACTCTCAGCGCGACGCTGTTGAGTTGAATTTCGATGGTTTTGAGTTGCTTTTTTCCCTCTCTTTTCCGCGTTTGAAAGGTTTTGGCGCTGTCGAGTTCGTTTTGGTGAGGATTCTGATTAACGGTAGCTGCTCACGTCCTGTAATGGACGCGTACTCCTCTGGAGAAGAGGTAGTTGTAAAGACGAGAAAACCGTATACAATCACAAAGCAAAGGGAACGATGGACAGAGGAGGAGCATAATAGGTTTCTAGAAGCTTTGAAGCTGCACGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGCCACGCACAGAAGTTTTTCACAAAGATTGCAGATTCCAGAGCTAAATGGTATAGAGGTTTAGACAAGCCATATTTAGGGAAGTGGCTCAGTGGTACGAACTGGAAAGGGACACGGTTAGAGCACATTTTAGAGGAAATACACAGGTTGATTGATCACCATGACAAGAGTGCAGTACCCACTTTGGGAACTGGGAAGTTTCGTGACACATTGGAGAAAGAAGCCCTTGTAAAGGGTGTTCCAATTGGACAAGCTCTTGATATAGATATTCCCCCTCCACGGCCCAAAAGAAAACCAAGCAATCCTTATCCTCGGAAGACCAGAATTGGTACCGCAACATTACATAGTGGAGCAAAGGATGGAAAGCTCAATTTAGTCGAATCTTCACATGACAACCAAGCACTGGACTTGGAAAAAGAACCACTTCCGGAGATTTATGATTTAGACAAGGGGCCAACAACAGTAAAGGAAAATAAGGAGGAGAACTGCTCAAAAGTATTTACAGTTATCCAGGAGGTACCATGTTCCTCTCTATCTTCAGCAAACAGGAGTTCAATATCTATGTCAGTGCCGCTGGGAAATTCATGCGTATTCAAGGAGATTACAACTTCAGTGAAAGAGGTAATAACTCGAGATGAAAAAACTGAATCATTTCTGACTGTTGAACTTGAAAATGGGAATTTGGAGATCAATGATGGAAAACAGGCAAATGGAACTAGTAAAAACTCCACGTTAGAGAATTCTGATGCTTTACAAATGAAATTGGTTCAAAATGAGAAAACAGATGGTCTCGATAGTGCATTAACAATAGAAGGAATGCAAGGCAATAATCAGAATTACCCTAGACATGTAACTGTGCACGTTGTTGACGGGAACCTTGGAACATGTACTCAAAATCCATCACAAGATATGCTGTTTCGAGACTGCATGTTTCAGCCAATAGGAGGGGCTAATGGGCAACCAAATCTTTTCACCAATTCAGCACCATCGAACACAAGAGAAAGTCAAAATAACACAGCACGATCTTCTGCTCATCAATCATTTCTTCCGTATCCTCCCTTCACCCAACACAACCAGGACGATTACCAATCATTTCTTCACATGTCTTCCACATTTTCTAATCTTATTGTCTCTACCTTGCTGCAAAACCCAGCAGCCCATGCTGCAGCAAGTTTCGCTGCTACATTTTGGCCCTATGCAAATCCAGAGACTTCAGCAGATTCTCCTAGGTGCTCTCAAGGAGGTTTCACATCTAGACAAATTGGTTCCCCTCCAAGCGTTGCAGCTATTGCAGCTGCTACTGTGGCTGCTGCAACTGCGTGGTGGGCAGCTCATGGACTGCTTCCTTTGTGTGCTCCTCTTCATACTGCTTTTGCTTGTCCTCCTGCATCTGTGACTGCAGTCCCATCAATGAATACTGCTGAAACACCATCTCTAAAGGCAGAACAAGAAAAGAGTACTCTACAAAATCCTCCTCTGCATGATCAGATGATGCATCCAGAATACTCGGAAGCTCCTCAAGCTCAACATTCAGCTTCAAAATCACTAGCTGTCATTTCATCAGATTCTGAGAGTGGAGATGCCAAGTTAAATACTTCACCAAAGACTACCGATCATGAGACGAACGAAATAATTTCTGAGCACCTTGATTCTGACAAAACGAAAGGCAGAAAACAGGTTGACCGTTCCTCGTGTGGTTCCAACACAGCCTCAAGCAGCGATGTGGAAACTGATGCACTAGGGAAGGATGAGAAAGGGAAGGAAGAGCCTGAAACACCCGATGCTAACCATTTAGCCCTTGAGTTTAGCAATCGTCGTAGAAGCATTTGCAACCTTACCGATTCTTGGAAAGAGGTCTCTGAAGAGGGGAAACTAGCCTTTCAGGCTTTGTTCTCCAGAGAGGTGTTGCCTCAAAGCTTTTCACCTCCTCATGCTTTAAAGAATAAGGACCAAATGGGCATCATCACCAATGATAACGAGCAAACCATAGATATCAGAAATGAAGACCTTGACAGCAAGAAATGCAGTTCTAACTATAAACCAATGCAGAAAAATCCGCCATTTGTAGAAAATAACGTGGGACTGTTAACCTTAGGGCTTGGACAAGGAAAGCTTAAGACTCGTCGAACAGGCTTTAAACCCTACAAAAGATGTTCCATGGAGGCCAAGGAAAATAGGGTTGGAGCGAGCAATCAAGGTGAAGAGAAAGGTTGTAAAAGAATACGTTTGGAAGGGGATACTTCGACTTGA 2694 0.4384 MPENEPSDECPVMIAHVRGSSSSSSSSSSSSMSWFRSEYSQRDAVELNFDGFELLFSLSFPRLKGFGAVEFVLVRILINGSCSRPVMDAYSSGEEVVVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKTAVQIRSHAQKFFTKIADSRAKWYRGLDKPYLGKWLSGTNWKGTRLEHILEEIHRLIDHHDKSAVPTLGTGKFRDTLEKEALVKGVPIGQALDIDIPPPRPKRKPSNPYPRKTRIGTATLHSGAKDGKLNLVESSHDNQALDLEKEPLPEIYDLDKGPTTVKENKEENCSKVFTVIQEVPCSSLSSANRSSISMSVPLGNSCVFKEITTSVKEVITRDEKTESFLTVELENGNLEINDGKQANGTSKNSTLENSDALQMKLVQNEKTDGLDSALTIEGMQGNNQNYPRHVTVHVVDGNLGTCTQNPSQDMLFRDCMFQPIGGANGQPNLFTNSAPSNTRESQNNTARSSAHQSFLPYPPFTQHNQDDYQSFLHMSSTFSNLIVSTLLQNPAAHAAASFAATFWPYANPETSADSPRCSQGGFTSRQIGSPPSVAAIAAATVAAATAWWAAHGLLPLCAPLHTAFACPPASVTAVPSMNTAETPSLKAEQEKSTLQNPPLHDQMMHPEYSEAPQAQHSASKSLAVISSDSESGDAKLNTSPKTTDHETNEIISEHLDSDKTKGRKQVDRSSCGSNTASSSDVETDALGKDEKGKEEPETPDANHLALEFSNRRRSICNLTDSWKEVSEEGKLAFQALFSREVLPQSFSPPHALKNKDQMGIITNDNEQTIDIRNEDLDSKKCSSNYKPMQKNPPFVENNVGLLTLGLGQGKLKTRRTGFKPYKRCSMEAKENRVGASNQGEEKGCKRIRLEGDTST 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00011 897 ProSiteProfiles SANT domain profile. 108 159 IPR017884 -
Vimu9g00011 897 Pfam Myb-like DNA-binding domain 110 153 IPR001005 -
Vimu9g00011 897 NCBIfam myb-like DNA-binding domain, SHAQKYF class 108 157 IPR006447 GO:0003677
Vimu9g00011 897 ProSiteProfiles Myb-like domain profile. 105 155 IPR001005 -
Vimu9g00011 897 MobiDBLite consensus disorder prediction 622 748 - -
Vimu9g00011 897 SMART sant 109 157 IPR001005 -
Vimu9g00011 897 MobiDBLite consensus disorder prediction 725 743 - -
Vimu9g00011 897 SUPERFAMILY Homeodomain-like 104 158 IPR009057 -
Vimu9g00011 897 Gene3D - 112 158 - -
Vimu9g00011 897 MobiDBLite consensus disorder prediction 654 680 - -
Vimu9g00011 897 CDD SANT 112 155 IPR001005 -
Vimu9g00011 897 MobiDBLite consensus disorder prediction 468 501 - -
Vimu9g00011 897 MobiDBLite consensus disorder prediction 709 724 - -
Vimu9g00011 897 MobiDBLite consensus disorder prediction 622 641 - -
Vimu9g00011 897 MobiDBLite consensus disorder prediction 681 708 - -
Vimu9g00011 897 FunFam protein REVEILLE 6 isoform X1 112 160 - -
Vimu9g00011 897 MobiDBLite consensus disorder prediction 871 897 - -
Vimu9g00011 897 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 159 IPR017930 -
Vimu9g00011 897 MobiDBLite consensus disorder prediction 234 262 - -
Vimu9g00011 897 PANTHER SWI/SNF COMPLEX-RELATED 23 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00011 Vimu-Chr9 99195 108356 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu9g00011 Myb_DNA-binding 2.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00011 K12133 - gmx:100101859 1140.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00011 9 99195 108356 Vimu9g00011 9 99195 108356 ECH