Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00010 ATGATAACCATGGAACCTAGAGTGATAGGGGATTACATAATGGGTCCTCCAATCGGGTCGGGTTCCTTTGCCGTGGTATGGCGTTCAAGGCACCGAGTTTCCGGTTTGGAAGTTGCGATTAAGGAGATTGATCAGAGACAACTCAGTCCTAAAGTCCAGGAACATCTTTTCAAAGAGATTTCGATCCTTAGTACCATCAATCACCCCAACATAGTTAGACTCTTCGAGACAATTCAGACCAATGACAGGATTTACCTTGTTTTGGAGTATTGTGCTGGTGGGGACCTTGCTGTTTACATTCAACGCCATGGCAAGGTTTCTGAAACGGTTGCACGCCATTTCATGAGACAATTGGCTGCTGGGTTACAGGTGCTTCAGGAAAAGAACCTCATTCACAGAGATTTAAAACCACAGAATTTACTATTGGCAACTACTGCAGCCACACCAATTATGAAAATAGGAGATTTTGGTTTTGCAAGGTCTCTCACACCCCAGAGTTTGGCTGATACACTATGTGGTTCACCTTATTACATGGCTCCAGAGATTATTGAGAATCAAAAGTACGATGCCAAGGCTGATTTATGGAGTGTTGGAGCAATTTTGTATCAACTAGTGATTGGGAGGCTACCATTTGATGGAAATACTCAATATCAGCTTTTTCAAAATATTTTGGCATCCACTGAACTGCACTTTCCGCCAGAGGCATTAGAAGAGCTACATTCTGATTGCTTGGATCTTTGCAGAAACCTCTTACGTCAAAATCCAGATGAGAGATTAACATTCAAGGCATTCTTCAACCATAATTTCCTTCAGAATTCCAGGTCAACCGTAGGAAAACTTACTGTTCATCAATCAGGTGGCTCTCTGTCCGGGATGTCTCCAACTATTGCAAGTGGTAAGATGGGGAAGGCTATTGATGCTGATACTCATTTGTCATACCCTGTATGCTATTCCCGTTTAATGCAGTCTGTAGAGAAAGACTATGTACTTGTCCATTCCCATTTTGCATCATTGGAGGCTTTTTCTGACTACTTTGATGCATCTGTGCAAGATGGTTCCTTATACAGTATTTCTCAAACTCATTCAAAGATTGCTAATCCGGATATCGGAGTTCCAAAACAAACAACGGATCTTACGTCTTCCTCCAGTAGAGGATTAGAGAATCTAGAAAGCAATAAACTTGATGCATGTGTGGCATCATGTGAATTTACTGCTTTAAGGGAAGAGCATGAAATTTCCTCACTGCAAACTTCAAACAGGTTTAAATTGTGGCATGAGTATGGGAAGATCCTTAAAGAACTTTCACAACAAAAGTTCTTTTCTCTATCAGTGTCATATGAATGTTTTATTCTATGCAGCATTACATATGAGAATGGACTGTATCTAGAGTCACTTGCAGTTGAGTTGGTGATTCTGGCGATATGGAAGAAGGCTTTAGAAATCTGTAACTCTTGGATGGCCTCCCTTACTACTAGTGGGTTGCCTGAAAGCAGTTCAACTAACGAATCTATATCTTCAAGTAATGTGGAGTTACCACAGACTTCAGAACTGAAAATAAATTTTAGTGATCCTTCATCTGTCTCCATGTGGGCCAAACATGAGTTTGTTCTTGCTGTTGATCGTGCTGAAAAACTATCATGTCGTGTTCAAAATATGGATGGAGCTGCTGAGATGCCAGATGCAATGGAAATTATATTCCAAACCGCTCTTTCAATCGGGACAAGTGGTGCGGTAGATGAATATATGGAGAACAGAGATAGGGCTAGTGCTTCTTACTCAAGAGCGATGCTGCTACTTTCATTTTTGGTGAGAGAAGCAGAGAACCTTCCACTGAACCCACCATTTTCACTCATTGCCACTAACAAAGAGAGAATCTTACAATACATTTACACATTACAGTCTCGTAAGAAATCTTCGTTGGCGTCCTCTTCAAATAAGCTACTTTCACTTACATCAAAGTAG 1962 0.4088 MITMEPRVIGDYIMGPPIGSGSFAVVWRSRHRVSGLEVAIKEIDQRQLSPKVQEHLFKEISILSTINHPNIVRLFETIQTNDRIYLVLEYCAGGDLAVYIQRHGKVSETVARHFMRQLAAGLQVLQEKNLIHRDLKPQNLLLATTAATPIMKIGDFGFARSLTPQSLADTLCGSPYYMAPEIIENQKYDAKADLWSVGAILYQLVIGRLPFDGNTQYQLFQNILASTELHFPPEALEELHSDCLDLCRNLLRQNPDERLTFKAFFNHNFLQNSRSTVGKLTVHQSGGSLSGMSPTIASGKMGKAIDADTHLSYPVCYSRLMQSVEKDYVLVHSHFASLEAFSDYFDASVQDGSLYSISQTHSKIANPDIGVPKQTTDLTSSSSRGLENLESNKLDACVASCEFTALREEHEISSLQTSNRFKLWHEYGKILKELSQQKFFSLSVSYECFILCSITYENGLYLESLAVELVILAIWKKALEICNSWMASLTTSGLPESSSTNESISSSNVELPQTSELKINFSDPSSVSMWAKHEFVLAVDRAEKLSCRVQNMDGAAEMPDAMEIIFQTALSIGTSGAVDEYMENRDRASASYSRAMLLLSFLVREAENLPLNPPFSLIATNKERILQYIYTLQSRKKSSLASSSNKLLSLTSK 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00010 653 ProSiteProfiles Protein kinase domain profile. 12 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00010 653 Pfam Protein kinase domain 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00010 653 FunFam Non-specific serine/threonine protein kinase 1 92 - -
Vimu9g00010 653 CDD STKc_ATG1_ULK_like 18 269 - -
Vimu9g00010 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vimu9g00010 653 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vimu9g00010 653 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 6 569 IPR045269 GO:0004674|GO:0006914
Vimu9g00010 653 SUPERFAMILY Protein kinase-like (PK-like) 8 271 IPR011009 -
Vimu9g00010 653 FunFam Serine/threonine-protein kinase ATG1 4 307 - -
Vimu9g00010 653 SMART serkin_6 12 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00010 653 Gene3D Transferase(Phosphotransferase) domain 1 4 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00010 Vimu-Chr9 93594 98172 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00010 8 260 CBL-interacting serine-threonine protein kinases AT2G30360 35.135 1.26e-48 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Vimu9g00010 Pkinase 1.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00010 - K08269 gmx:100779262 912.524