Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00008 TTGAAGGTGGGGTCAGTGTGTAATTTTATGGAGTTGATGCAAGAAGTGAAAGGGTATTCCGATAGCAGAGAGGAGGAAGAGGAAGAGGAGACAGCAGAAGAAATCGTCACAAGAGAAGAAAGCAGCAGTAAGCACCACTACCCCTTTTCTTCTCCCTCTTTGTCTTTATCTCCTGCTCCTTCAATATCAAATTATACTTCTACTACTTCTGCTGCACGTCCTCATCACCATCATCATGTAATAAATATTCCTCACCAACAAAATCCATGGCTGGGGATGAATATTCATGATCATGATCATCATCTTCAGTCTCCAGAGACCACTGAATCTCACAATTCATCATCTGGGTTAGGGTTGTTACACCAGGATGCAGCAGGTTCCAATTTCATCATCGCCAATCATCATAATCATCATCACCACCACACAACAAAGCAGCTAGATTTCATGGACTTGACACTGGGGAGCAGCAAGGATGAGGGGAATTTGCAAGGATCGGGAGCTGCTGCTTCTTCTGTGTTTGTTCATCATGCAAGTGGTAGCTCTTCTGCCGATGGTAACGTTAACAACCTGCAGCAGCCTTCTGAGAAGGAGCACATGTTTGACAAAGTTGTGACACCAAGTGATGTGGGTAAGCTGAACCGATTGGTGATACCAAAGCAGCATGCTGAGAAGTATTTCCCTCTTGATTCCTCAGCCAATGAGAAGGGGCTGCTGCTCAATTTTGAGGACAGAAATGGTAAGTCATGGAGGTTCAGGTACTCCTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGTTGGAGCCGTTTTGTGAAGGAGAAGAAGCTTGATGCCGGTGACATTGTGTCCTTCCAGCGTGGTGTAGGGGATTTGTATAGGCATAGGTTGTACATAGATTGGAGGAGAAGGCCTGATCACCATCACCACCATGGTCCTGACCCTTCAGCCACACTCTTCACACCTTTCTTTCTTCCCAATCAGCCTCACTTCATCAGATGGGGTGCCACTGGCAGATTCTACTCCCTCCCTTCGCCAAACCCACCACGCCACCATGACCATTTGCAACAACACCTCAATTACAACACCATGTATCATCAACATCATCATCCCTTTCATCACCAATTGCAAGGTGCTGCTGGTGCTGGAGGAAATGGAACTCATCACTACAACAACTATCATGACATGACTAGTTCAGGATCTGGCTCCGTCTATTACCTCAGGTCAACACCCCCACCAATGCCATTCACTGATCACCAAACCTTGAACACAAGACAACAACAAGAGGGAGGCAATGTTTCTCATCCTCCTATAATCATTGATTCTGTTCCAGTTGCTCACCACCACCATCATCACCACCACCACCGTGGTGGCAAGAGTGGTGGTTCTAGTACTAGTACAAGTCCTAGCACTGCAGGCAAAAGACTTAGGCTGTTTGGGGTGAATATGGAATGTGCTTCTTCAACATCAGAAGACCCCAATTGCTTCAGCTTATTGTCCTCATCTTCAATGGCACATGCGACAATGGCTAATTCCAATTCACCTCCCTCTTCTTCACTACCACCTCTTCAGCTTTTGAGGGAAGACTCACTTTCATCACCATCATCAGCAAGGTTTGGGGATCAGAGAGGAGAACAACCTTCAATGCTTTTTGATCTGGATCCTTCTTTGCAATACCGGCAGTGA 1686 0.4626 MKVGSVCNFMELMQEVKGYSDSREEEEEEETAEEIVTREESSSKHHYPFSSPSLSLSPAPSISNYTSTTSAARPHHHHHVINIPHQQNPWLGMNIHDHDHHLQSPETTESHNSSSGLGLLHQDAAGSNFIIANHHNHHHHHTTKQLDFMDLTLGSSKDEGNLQGSGAAASSVFVHHASGSSSADGNVNNLQQPSEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGDLYRHRLYIDWRRRPDHHHHHGPDPSATLFTPFFLPNQPHFIRWGATGRFYSLPSPNPPRHHDHLQQHLNYNTMYHQHHHPFHHQLQGAAGAGGNGTHHYNNYHDMTSSGSGSVYYLRSTPPPMPFTDHQTLNTRQQQEGGNVSHPPIIIDSVPVAHHHHHHHHHRGGKSGGSSTSTSPSTAGKRLRLFGVNMECASSTSEDPNCFSLLSSSSMAHATMANSNSPPSSSLPPLQLLREDSLSSPSSARFGDQRGEQPSMLFDLDPSLQYRQ 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00008 561 CDD B3_DNA 198 287 IPR003340 GO:0003677
Vimu9g00008 561 MobiDBLite consensus disorder prediction 89 120 - -
Vimu9g00008 561 FunFam B3 domain-containing protein 193 313 - -
Vimu9g00008 561 Coils Coil 9 29 - -
Vimu9g00008 561 MobiDBLite consensus disorder prediction 17 75 - -
Vimu9g00008 561 Pfam B3 DNA binding domain 200 304 IPR003340 GO:0003677
Vimu9g00008 561 SUPERFAMILY DNA-binding pseudobarrel domain 196 301 IPR015300 -
Vimu9g00008 561 MobiDBLite consensus disorder prediction 507 561 - -
Vimu9g00008 561 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 41 501 IPR044800 GO:0003700
Vimu9g00008 561 SMART B3_2 200 305 IPR003340 GO:0003677
Vimu9g00008 561 ProSiteProfiles B3 DNA-binding domain profile. 200 305 IPR003340 GO:0003677
Vimu9g00008 561 MobiDBLite consensus disorder prediction 507 542 - -
Vimu9g00008 561 MobiDBLite consensus disorder prediction 446 472 - -
Vimu9g00008 561 Gene3D - 194 312 IPR015300 -
Vimu9g00008 561 MobiDBLite consensus disorder prediction 46 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00008 Vimu-Chr9 43735 45420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00008 191 488 RAV Transcription Factor Family AT2G46870 49.164 8.79e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu9g00008 B3 2.7e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00008 K09287 - gmx:100781424 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00008 9 43735 45420 Vimu9g00008 9 43735 45420 ECH
Vimu10g00060 10 359568 361178 Vimu9g00008 9 43735 45420 PCT