Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00006 ATGTTAGCAAAATCAGTAATACCATTCAAAGACTCAAAATGGTTTTTCTTCAGTCCTGTTAATTTGAAGTACTCAAATAGTAAAAGGTTTAAAAGGACAACCAAGAGTGGTTTCTGGAAACCAACGGGAAAACCCCGTGATGTTAGAAAAGGGGACACCAAAATTGGGACTAAGAAGACTCTTGTTTTCCAGAATGGTCATGTTTCCAAAGGTGTCACTGTCAATTCCAACTGGGTTATTCACGAATATCATGCTCTTAACTTTCTCCAAAGCCAGGTTTGTATTTCATTTTTTAAGAAACTTGTAACTCTCATCGGAAATAATCTCTGTCCTAAACTACAGTGTGTAGGAGTGTAA 357 0.3669 MLAKSVIPFKDSKWFFFSPVNLKYSNSKRFKRTTKSGFWKPTGKPRDVRKGDTKIGTKKTLVFQNGHVSKGVTVNSNWVIHEYHALNFLQSQVCISFFKKLVTLIGNNLCPKLQCVGV 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00006 118 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 10 99 - -
Vimu9g00006 118 SUPERFAMILY NAC domain 8 87 IPR036093 GO:0003677|GO:0006355
Vimu9g00006 118 ProSiteProfiles NAC domain profile. 1 100 IPR003441 GO:0003677|GO:0006355
Vimu9g00006 118 Pfam No apical meristem (NAM) protein 10 84 IPR003441 GO:0003677|GO:0006355
Vimu9g00006 118 Gene3D NAC domain 2 101 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00006 Vimu-Chr9 27943 29093 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00006 3 83 NAC Transcription Factor Family AT5G17260 53.086 1.37e-23 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu9g00006 NAM 7.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00006 - - vum:124848415 232.261