Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00003 ATGTTCGCGTTATTCGGGGAATCAGATGAGCAAGTCGATTTTCGAGAATGGTTTTTCTTCAGTCCTGTTGGTTTCAAGTATTCAAACAGTAAAAGGATTAACAGGACAACCAAGTGTGGCTTCTGGAAACCCACTGGAAAAGATCGTGAGATTAGGAGCTCCCACTCCAACACTCTCATTGCCACAAAAAAGACTCTCGTTTACTACAAAGGCCGCGTTTCACGTGGTGAGAAATCCAACTGGAGGACTTTCGTTTTGTGCCGCTTGATGAAGAAACCTGGGGAAACAACTGAAGGTGGAGGTGATGAAGGGGAGAGCAGTGGAATCATGGTTCCTGGCTATGAGAATCAGTCGATAGCAGGAGGCATTCCTTCAGTAAGCTGA 384 0.4583 MFALFGESDEQVDFREWFFFSPVGFKYSNSKRINRTTKCGFWKPTGKDREIRSSHSNTLIATKKTLVYYKGRVSRGEKSNWRTFVLCRLMKKPGETTEGGGDEGESSGIMVPGYENQSIAGGIPSVS 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00003 127 Gene3D NAC domain 3 96 IPR036093 GO:0003677|GO:0006355
Vimu9g00003 127 Pfam No apical meristem (NAM) protein 12 81 IPR003441 GO:0003677|GO:0006355
Vimu9g00003 127 MobiDBLite consensus disorder prediction 93 127 - -
Vimu9g00003 127 SUPERFAMILY NAC domain 13 92 IPR036093 GO:0003677|GO:0006355
Vimu9g00003 127 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 92 - -
Vimu9g00003 127 ProSiteProfiles NAC domain profile. 1 116 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00003 Vimu-Chr9 16692 17821 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00003 11 99 NAC Transcription Factor Family AT4G35580 43.519 1.51e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu9g00003 NAM 6.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00003 - - vra:106753224 213.001