Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00001 CCCACAGAAGAAGAACTTGTCGACTATTACCTCAGACACAGGTTGCTGGGTGATGATCCACAAGTCCACGTCATACCCGACATCGACCTTTGTGAAGTGGAACCTTGGCACTTCTTCACTGATGTTTACTTATTTTCATGTTTGAAACAGCGTTATTCGGGGAATCAGATGAGCAATCCTGTTGGTTTCAAGTATTCAAACAGTAAAAGGATTAACAGGACAACCAAGTGTGGCTTCTGGAAACCCACTGGAAAAGATCGTGAGATTAGGAGCTCCCACTCCAACACTCTCATTGCCACAAAAAAGACTCTCGTTTACTACAAAGGCCGCGTTTCACGTGGTGAGAAATCCAACTGGGTTATTCATGAATACCATGCTGTTACCTTTCACGAAAGCCAGAGGACTTTCGTTTTGTGCCGCTTGATGAAGAAACCTGGGGAAACAACTGAAGGTGGAGGTGATGAAGGGGAGAGCAGTGGAATCATGGTTCCTGGCTATGAGAATCAGTCGATAGCAGGAGGCATTCCTTCAAGAAGTACTCTTACTGGAATGGAAACGACCTTACAGCAAGATGAAACGTCTTTTCCAAACTACTCATATCACGATGCCTATTTTAGAAATGAATCTAACATTGAGCATTTTTCATATGAAACTACTCAGGAGAAGGAATTCCTGAATTCTATTTTTGTTCCTGACGGTTATGTTAACAATGAACAAAATATAAATACCTTCTACAATACTTTCACCCAATCGGAGTCATTGAGAAAGGTATACCTTGAAAGTAGTGATACGGATGCTGAGGCCGTCTCCGAACAGGGTGATAATATTACGAATATTCCAACAGTGTTTAGTAGATATCTTAATGTAGACGAATACCATTCATCAAAAGGATTGATTCTGAATTATCAGACGTGGATGTCGAGGATGGCTCGGAAGGATTTTCTCATTGTGAATCAGAAGAAAAATATTTCAAGAGATAACTTGAAACCGGAAGCCATCAATCTTCTGATATCAATAGTAAAGCACCCTGTTTCATCATCCACCCTTCTTTCGTCATTCAACACTGAAGACATGTGTTTACAAAAACTAATGGAGATTGTAGGATACGGTTTTCGTCCCACCGATGAAGAACTTGTCCACTCTCACCTCAAACACAAGTTGCTAGATGATGATCCCCATGTCCATGTCTTGACTGACATAGATCTTTCCGATGTGGAACCTTCGGAAATACCAGAATGGTTTTTCTTCAGTCCTGTTAAGTTGAAGTACTCAAATAGTGAAAGGTTTAAAAGGACAACCAAGAGTGGGTTCTGGAAACCCACGGGAGAACCCCGTGATGTTAGAACAGAGGACACCAACACTGTCATTGGGACTAAGAAGACTCTTGTTTTCTATATTGGTCGTGCTTCCAAAGCTGTCAAATCCAACTGGGTTATTCACGAATATCATGCTCTTAACTCAATCCAAAGCCAGAATGCTTTTGTGTTATGCCGCTTGAAAAAGAAACCTGGGAAAACGACCGAAGGAGGAACTACTGCACTGATCTGTGATGAAGAGGAATCCAGTAGAAGTGTGGTTTCTGACAATGAACATCAGGCAATAGCAGAAGGAGTTCCATCTGGAGATACTTCTAGCAGAACGGAAACAATCTGTCAGTTAACATATCAGGCAGAAAAAAACATCTCCCCAGCAGAACAGTCTCTAATTGATATTGAGAAGGATGAAGCATCTTTCCCAAACCCATCTAACGATGCCTATTTTAGAAAGGAAATCAACAATAGGCATATCCCATATGCACAGACTCCATTTGAACCTATGCATACTTCTTTAGGATCTACCCAAAATCCATTTGAAGCTGGATCTATGTTAACTCTTTTTGAACCTACACAACCTTCATTTGAAACTACAAAGACTCCTTTTGAAACTATGGAGACTCCTTTTGATACACGGGAGACTCTTTTAGGAACTTTGCAATCTCCTTTGGGAGCTATGCAGACTCCTTTAGGAGCTATGTATACTTCATTTGAAACTACGCAGACTTCTTTAGGATATATGTTAACTCCTTTAGAAACTACACAACCTTCATTTGAAACTATAAAGACTCCTCTTAAAACTATGGAGACTCCTTTTGATACTATGGAGACTCTTTCAGGAACTATGCAATCTCCTTTGGGAGCTATGTATACTTCATTTGAAACTACGCAGACTTCTTTAGGATCTATGTTAACTCCTTTAGAAACTACACAACCTTCATTTGAAACTATAAATACTCCTTTTGAAACTATGGAGACTCCTTTTGATACTATGGAGACTCTTTCAGGAACTATGCAGTCTCCTTTGGGAGCTATGCAGACTCCTTTAGGAGCTATGTATACTTCTTTTGAAACTATGCAGACTTCTTTAGGATCTATGTTAACTCCTTTTGAAGCTACACAACCTTCATTTGAAACTACAAATACTCCTTTTGAAACTATGGAGACTCCTTTGGAAGCTATGGTGACTCCTTTGGGAGCTATGTATACTTCATTTGAAACTACGCAAACTTCTTTAGGATCTATGTTAACTCCTTTTGAAACTACACAGACTTCATTTGAAACTTCGAAGTCTTTGGAAACTCCTTTTGAAACTATTGAGACTCCTTTAGGAGCTATGTATACTCCACCTGAAATGATGCATCCTCCATCTGAAACTACGCAGATTCCTTTAGGATCTATGCAGACTCCATTTGGAGTTACAAGTCCTTTAGCATCTAGGAAGATTCCTTTTGAAAGTAGGAAAATTCCATTTCAAAATACACATACTCCATCGCAGACTCCTTTTGAGTTCCCGAAATCATTGAAAAGGGCATATTGTGAAAGCACTTGCATAAATCCAGAAGTCGTCCTTAAACTGGACGCTTGTATTGATGATAGTTCAACTATGTGTACTAAATATCTTAATTCAGATGAATACCATTCATCAAAAATGTTTAAAACATCATATGATGTTGTAAATGGTGACACAGATCTTCTATTTTCCAACCAAGAAGCAAGTCAGAAACAAGAAAGTATATTTCAAGACAATTTACGGGGAGTGGAGACATCCTCATGTGACTCTACAGTATATAATCCTGAAGAGATCAATTGGAATGAAATATCTAGTTTTCCTTGCACTTAA 3156 0.392 PTEEELVDYYLRHRLLGDDPQVHVIPDIDLCEVEPWHFFTDVYLFSCLKQRYSGNQMSNPVGFKYSNSKRINRTTKCGFWKPTGKDREIRSSHSNTLIATKKTLVYYKGRVSRGEKSNWVIHEYHAVTFHESQRTFVLCRLMKKPGETTEGGGDEGESSGIMVPGYENQSIAGGIPSRSTLTGMETTLQQDETSFPNYSYHDAYFRNESNIEHFSYETTQEKEFLNSIFVPDGYVNNEQNINTFYNTFTQSESLRKVYLESSDTDAEAVSEQGDNITNIPTVFSRYLNVDEYHSSKGLILNYQTWMSRMARKDFLIVNQKKNISRDNLKPEAINLLISIVKHPVSSSTLLSSFNTEDMCLQKLMEIVGYGFRPTDEELVHSHLKHKLLDDDPHVHVLTDIDLSDVEPSEIPEWFFFSPVKLKYSNSERFKRTTKSGFWKPTGEPRDVRTEDTNTVIGTKKTLVFYIGRASKAVKSNWVIHEYHALNSIQSQNAFVLCRLKKKPGKTTEGGTTALICDEEESSRSVVSDNEHQAIAEGVPSGDTSSRTETICQLTYQAEKNISPAEQSLIDIEKDEASFPNPSNDAYFRKEINNRHIPYAQTPFEPMHTSLGSTQNPFEAGSMLTLFEPTQPSFETTKTPFETMETPFDTRETLLGTLQSPLGAMQTPLGAMYTSFETTQTSLGYMLTPLETTQPSFETIKTPLKTMETPFDTMETLSGTMQSPLGAMYTSFETTQTSLGSMLTPLETTQPSFETINTPFETMETPFDTMETLSGTMQSPLGAMQTPLGAMYTSFETMQTSLGSMLTPFEATQPSFETTNTPFETMETPLEAMVTPLGAMYTSFETTQTSLGSMLTPFETTQTSFETSKSLETPFETIETPLGAMYTPPEMMHPPSETTQIPLGSMQTPFGVTSPLASRKIPFESRKIPFQNTHTPSQTPFEFPKSLKRAYCESTCINPEVVLKLDACIDDSSTMCTKYLNSDEYHSSKMFKTSYDVVNGDTDLLFSNQEASQKQESIFQDNLRGVETSSCDSTVYNPEEINWNEISSFPCT 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00001 1051 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 367 530 - -
Vimu9g00001 1051 SUPERFAMILY NAC domain 1 144 IPR036093 GO:0003677|GO:0006355
Vimu9g00001 1051 ProSiteProfiles NAC domain profile. 365 502 IPR003441 GO:0003677|GO:0006355
Vimu9g00001 1051 ProSiteProfiles NAC domain profile. 1 144 IPR003441 GO:0003677|GO:0006355
Vimu9g00001 1051 SUPERFAMILY NAC domain 360 502 IPR036093 GO:0003677|GO:0006355
Vimu9g00001 1051 Gene3D NAC domain 374 506 IPR036093 GO:0003677|GO:0006355
Vimu9g00001 1051 Gene3D NAC domain 2 148 IPR036093 GO:0003677|GO:0006355
Vimu9g00001 1051 Pfam No apical meristem (NAM) protein 1 125 IPR003441 GO:0003677|GO:0006355
Vimu9g00001 1051 Pfam No apical meristem (NAM) protein 367 483 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00001 Vimu-Chr9 1419 7645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00001 367 652 NAC Transcription Factor Family AT3G49530 31.148 4.76e-31 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu9g00001 NAM 7.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00001 - - vra:106778155 1275.77