Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02712 TTGGCCTTAGTACTGAAATGGAAATGTAGATATCAAGCGTTTGATGAATTGGAAGGTATTAAAGTGGCTTGGAATCAAATTAAGCTAACATATGTGTTACGTAACTCTGAAGATTTTAAGTGGCTTTATTCGGAGGTTTATTTATTCAAGACTTTGAATCATAAGAATATAATTAAGTTTTATAACTCATGGATTGACTCCAAGAGCGAGAACATCAACTTCGTTACTAAAATTTTCACCTCAGGAACATTGCGCCAATACCCAAAAAAACACAAGCATGTTGATTTGAGAGTTGTGAAGAAATGGTCAAAAAAATTTTGGAAGGCCTTCACTATCTTCAGAATAATAATCCTAGGATCATTCATAGGATTCTAA 375 0.3307 MALVLKWKCRYQAFDELEGIKVAWNQIKLTYVLRNSEDFKWLYSEVYLFKTLNHKNIIKFYNSWIDSKSENINFVTKIFTSGTLRQYPKKHKHVDLRVVKKWSKKFWKAFTIFRIIILGSFIGF 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02712 124 Gene3D Phosphorylase Kinase; domain 1 6 77 - -
Vimu8g02712 124 SUPERFAMILY Protein kinase-like (PK-like) 11 107 IPR011009 -
Vimu8g02712 124 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 8 108 - -
Vimu8g02712 124 Pfam Protein tyrosine and serine/threonine kinase 15 98 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02712 Vimu-Chr8 38307144 38307602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02712 8 110 MAP Kinase Kinase Kinase AT3G22420 54.369 2.81e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vimu8g02712 PK_Tyr_Ser-Thr 1.3e-05 CL0016