Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02699 ATGGTAGACGATGGCGCCGTGGTAGTGATAGATGGCATCGCCGCTGACACCGGCGAATATAGTGGCACTACTGCTGACAACAAAAACTTTTTTCCTCGAAAGAAACTTGGTTTCCATGGAAGCTCGAAGAAGATGAAGGCTAGAGAGGCGCTTTTTGTGTGGCCCGAAGACATGGAGAAACTCGCGATTAAGGTTCTGATTCTGTCTGGCGGTGGTGAAAATGTTGGGATGGCATTCAAGGAGCAAGGTTTGGTGTTGGCAGTGCTTTTGGGCCTTTTGGTATTTTTCTCTATGGCAAAGACTTCAATCACCACACTTTGGTCTTGGAGGATTATTGGACATGTGTCGCATAGAAACCAACCCCTCCTGTATCCTACACATTACACTCTTGTTTTGTTTGAAGTTGCTTATATGCAACCAAGCTCTCCTGCAGCTCTGGTGGCAAGCGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACGAATGTAGATGGTAAGCAGAAAATAATGTTCGCTCTTACCTCTATCAAAAGTATTGGCAGACGATTCGCTAACATTGTCTGCAAAAAAGCCGATGTCGACATGACATGTTGTACTTGTGTTGTTATTTATGATGAGTTTCGTGTGACTCATGGAACTTGTAGCCTTAGCTTCCTTCTAGAAGTCTCCGTGGAAGAAGAGTTGATCCTGGAGTGTGATGGGTGTCGCCGCCCATGCAAATTTGATGTGCATAAGAAATGCAGTATAGTTAGGAAGTGA 759 0.4519 MVDDGAVVVIDGIAADTGEYSGTTADNKNFFPRKKLGFHGSSKKMKAREALFVWPEDMEKLAIKVLILSGGGENVGMAFKEQGLVLAVLLGLLVFFSMAKTSITTLWSWRIIGHVSHRNQPLLYPTHYTLVLFEVAYMQPSSPAALVASEDFQHILRVLNTNVDGKQKIMFALTSIKSIGRRFANIVCKKADVDMTCCTCVVIYDEFRVTHGTCSLSFLLEVSVEEELILECDGCRRPCKFDVHKKCSIVRK 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02699 252 SUPERFAMILY S13-like H2TH domain 156 197 IPR010979 GO:0003676
Vimu8g02699 252 ProSiteProfiles Ribosomal protein S13 family profile. 158 194 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vimu8g02699 252 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 146 197 - -
Vimu8g02699 252 Gene3D - 144 199 - -
Vimu8g02699 252 Pfam Ribosomal protein S13/S18 157 196 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02699 Vimu-Chr8 37834663 37839755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02699 145 196 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 88.462 5.72e-26 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02699 K02964 - qsa:O6P43_008067 100.908