Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02683 ATGATTGCAGAAAAATTCTATCTTTTTGAATTAGGAGGAGTAGATTTAATTCTGGGAGTTTCGTGGTTGGCTACTTTAGGAGAAGTTAAGACTAATTGGAAGACTTTAACTATGAGATTTAATCAAGATGCAAGGGAAGTGAGAATTCAAGGACATCCAACTCTGACAAAAAGAGTTATTACACCAGAGGCATTATTGAAAGAAACTGAGATTGAAGTGGTTTCTGTGGTATGGAATATGGGTTATACAAAGTTAGAGGAGAGGGTGGATGATGGTGAAAAATTGCAGCCAGAACAGCAAGCAGAGTTAGAGGAAATTTTGGAAGATTTTGAGGATATTTTCCAAGAACCAAAAGGATTACCTCCTAACAGGTTAATGAACCATCGAATTCCTATCAAAGTAGGAGTGGATCCTGTGAATGAGTTACTAGATGAATTAAATGGGGCTACTTATTTTTCTAAAGTTGATTTGAAGGCTGGATACCACCAAATCCGGATGGAGGAGAAAGATATTTCAAAGACTACTTTTTGTACTCATCAAGGGCATTATGAATTTTTGGTGATGTCATTTGGATTATCTAACGCTCCTGCCACTTTTCAATGTTTAATGAACACGGTATTGAGGCAGTTTTTGAGGAGATGTGTACTAGTTTTCTTTGATGATATTTTAATTTACAGCAATTCATGGGAGGAACATAGGGACCATCTAAAGCAAGTTCTTCAAACATTGAGACAACAACAACTGTATGCCAATAAGAAGAAATGTGACTTTGGCAGGTTACAAATCAAATATTTGGGACATTGTATTTCCAGAAAAGGAGTGATGATGGATCCAGAGAAGATTAAAGCTGTGAAGGAATGGCCTGAACCACATAACATCAAAGATTTAAGGGGATTCCTAGGGCTATCGGGATATTATCGGCGCTTTATTAAGGATTATGGGAAGATTGCTAAGCCATTGACAGATCTCTTACGAAAGGGCCAGTTTAAATGGACTTCCAAAGGTAAAGCAGCCATGCAAACCCTTAAAATTGCTCTCACCTCAGCACCATTGTTAGCACTACCTGATTTTTCACAGATTTTCCATGTGGAGTGTGATGCATCTGGAAAAGAAGGAACTGAGGCTTTGGTTCTTTCTATTCAACATTGGGGACCATATTTGTTGGGGAAAAAATTTGTGGTGCATACAGATCAAAGAAGTTTGAGGTATTTATTGGAACAACGTATTACCACTCAAAATCAAAAAAATTGGTTGGCCAAGCTTTTGGGTTATGAGTTTGAGATTGCATACAGATCTGGTGCTACTAACAAGGTGGTTGATGCCTTGTCACGCCAATTGGAGGAGCCAGAAACTGCAGAGTTAGAATTGAAGGGCATTTCTAGACCTTTTTGGCAGGATTTTCAGGAAATAATGGGGGAAGTACAACAGGATATTGTACTCCAAAAGATCATTACTGATTTGGACAACAACCCTGATTCACATCCTAATTTCACAATGGAGCATGACCGACTGCACTATAAAGGAACGATGGTTCTTTCGGCCAAATCAGTTTGGGTTCAAAAGTTAATTGCAGAATTTCATGTTACACAAACTGGGGGACATTTTGGAGTCTTCAGAACGTATAGGAAGTTGGCTCAAACTCTTTATTGGATAGGCACGAAGAAGGATGTCACGGAATTTGTTGCTTCTTGTTTGAAATATTGTGACCAAAATGGAGTCACTCCAAAGTGCTCTTTCTCCTCTCACAGTTGCACTTCTGGTTCTAATCCCGCCATTCCTCTACCTCTTCCTTGTGCTCCACCGCACCAGAATCAAAGAACCACCCACAATCCCCGGCACATGGCCGATTATCGGCCACCTCCCCCTGCTAGCGCGGTCCCCCGCCACCCACTACCTCTTGGGCACGTTGGCGGACCGTCATGGCCTCATCTTCAACATCAATATAGGCACAGTGAAAACCGTAGTCATCAACAACTGGGAAATGGCGAAAGAGTGCTTCAACACAAACGTAACCTGCCAAAACATGACCTACAACCTCGCCATGCTCGGATTCGCACCCTACGGAACGTTGCGTTTGTGTTCGTCGCAGACCACCGCATCGACACGCTCTCACACGTGCGCATCTCCGAGGTGAGAACCTTAGCGAAAGAGCTTTACTACAAGTGGAAACGTGGAAAAACAGAGAAGGACTTTTTTATGGTGGACATGACGCAGTGGCTGAAGGAAGTTGCGTTCAACGTGCTGCTGAGGATGGTTGCCGGGAAGAGGTACTTCGGAGAAAAAGCGGTGGTTGACGAGGAAGAAGCGCGAATATGTTTGGGGATGTTCAAAGAATACATGCGGCTATTTGGTGTTTTCATGACAGGGGACGCGGTCCCGTGGCTGAGGCGGTTTGATTTCGGAGGGCATGAGAAGGCCATGAAAGAGAATTTCACGCAACTGGATGCTGTGGTTGGGGAATGGTTGGAAGAACACAAAAGGAAAAGGAAATTGAACGGCGAGAAAGGTGAGAAAGGGGGAGATTTCATGGAGTCGATGCTGTCGGATTACAATGGAACTAACATTCATGGGTTTGATTCTGATACTATCATCAAAGCCACGACAATGGCATTGATTTTGGGTGGACCAGATACAAGCTTCGCTAGTAACATGTGGACTCTGTCTTTACTACTGAACAATCCTGGAGCATTGAAGAAAGTAATGGAAGAAATTGACACTCACATTGGGAAAGAGAGACTTGTGACTGAATCAGATACGAACAAGTTGGTGTACCTTCATGCAGTTGTTAAGGAGTCACTAAGGCTATATCCACCCACTCCTCTTAATGCTCCTCGTGAATTCAGAGAAGATTGCAAGCTTGGAGAATACCATGTGAAGAAAGGAACTCGTCTGATCACAAACTTGTGGAAGATCCAAACAGACCCTAAGATTTGGCCAGAGCCTTTGGAGTTCAAGCTTGAAAGGTTCCTCACCACACACAAAGATGTAGATGTAAAGGGAAAACACTTTGAGCTCATCCCTTTTGGAAGTGGTAGGAGGATATGCCCTAGAGTGACCTTTGGCCTTAAAACTTCTTATTTAACTTTGGCAAACTTTCTTCACTGCTTTCATGTCTCTAAATCCTCAACTGAACCTATAGATATGACTTCAGCTGTGGAATTTACCAATGTTAAGGTTACTCCCCTTCAACTTCTCATCAAACCTCGTTTGGCTCCTACTCTTTATGAAAGCATGTAA 3237 0.4242 MIAEKFYLFELGGVDLILGVSWLATLGEVKTNWKTLTMRFNQDAREVRIQGHPTLTKRVITPEALLKETEIEVVSVVWNMGYTKLEERVDDGEKLQPEQQAELEEILEDFEDIFQEPKGLPPNRLMNHRIPIKVGVDPVNELLDELNGATYFSKVDLKAGYHQIRMEEKDISKTTFCTHQGHYEFLVMSFGLSNAPATFQCLMNTVLRQFLRRCVLVFFDDILIYSNSWEEHRDHLKQVLQTLRQQQLYANKKKCDFGRLQIKYLGHCISRKGVMMDPEKIKAVKEWPEPHNIKDLRGFLGLSGYYRRFIKDYGKIAKPLTDLLRKGQFKWTSKGKAAMQTLKIALTSAPLLALPDFSQIFHVECDASGKEGTEALVLSIQHWGPYLLGKKFVVHTDQRSLRYLLEQRITTQNQKNWLAKLLGYEFEIAYRSGATNKVVDALSRQLEEPETAELELKGISRPFWQDFQEIMGEVQQDIVLQKIITDLDNNPDSHPNFTMEHDRLHYKGTMVLSAKSVWVQKLIAEFHVTQTGGHFGVFRTYRKLAQTLYWIGTKKDVTEFVASCLKYCDQNGVTPKCSFSSHSCTSGSNPAIPLPLPCAPPHQNQRTTHNPRHMADYRPPPPASAVPRHPLPLGHVGGPSWPHLQHQYRHSENRSHQQLGNGERVLQHKRNLPKHDLQPRHARIRTLRNVAFVFVADHRIDTLSHVRISEVRTLAKELYYKWKRGKTEKDFFMVDMTQWLKEVAFNVLLRMVAGKRYFGEKAVVDEEEARICLGMFKEYMRLFGVFMTGDAVPWLRRFDFGGHEKAMKENFTQLDAVVGEWLEEHKRKRKLNGEKGEKGGDFMESMLSDYNGTNIHGFDSDTIIKATTMALILGGPDTSFASNMWTLSLLLNNPGALKKVMEEIDTHIGKERLVTESDTNKLVYLHAVVKESLRLYPPTPLNAPREFREDCKLGEYHVKKGTRLITNLWKIQTDPKIWPEPLEFKLERFLTTHKDVDVKGKHFELIPFGSGRRICPRVTFGLKTSYLTLANFLHCFHVSKSSTEPIDMTSAVEFTNVKVTPLQLLIKPRLAPTLYESM 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02683 1078 Gene3D - 278 370 IPR043128 -
Vimu8g02683 1078 Pfam RNase H-like domain found in reverse transcriptase 331 369 IPR041577 -
Vimu8g02683 1078 Pfam RNase H-like domain found in reverse transcriptase 375 424 IPR041373 -
Vimu8g02683 1078 Pfam Cytochrome P450 712 1050 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02683 1078 Gene3D - 482 570 - -
Vimu8g02683 1078 SUPERFAMILY Cytochrome P450 679 1069 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02683 1078 FunFam Cytochrome P450 82C4 671 1067 - -
Vimu8g02683 1078 Gene3D - 138 269 IPR043128 -
Vimu8g02683 1078 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 1 269 IPR000477 -
Vimu8g02683 1078 PANTHER CYTOCHROME P450 82C3-RELATED 684 1075 - -
Vimu8g02683 1078 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 121 267 IPR000477 -
Vimu8g02683 1078 Gene3D Cytochrome P450 644 1071 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02683 1078 SUPERFAMILY DNA/RNA polymerases 106 431 IPR043502 -
Vimu8g02683 1078 PRINTS P450 superfamily signature 874 891 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02683 1078 PRINTS P450 superfamily signature 927 938 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02683 1078 PRINTS P450 superfamily signature 1006 1015 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02683 1078 Pfam Integrase zinc binding domain 519 566 IPR041588 -
Vimu8g02683 1078 CDD RT_LTR 141 269 - -
Vimu8g02683 1078 PRINTS E-class P450 group I signature 883 909 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02683 1078 PRINTS E-class P450 group I signature 743 761 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02683 1078 PRINTS E-class P450 group I signature 926 944 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02683 1078 PRINTS E-class P450 group I signature 1005 1015 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02683 1078 PRINTS E-class P450 group I signature 1015 1038 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02683 1078 PRINTS E-class P450 group I signature 863 880 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02683 1078 PRINTS E-class P450 group I signature 967 991 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02683 1078 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 162 194 - -
Vimu8g02683 1078 FunFam Transposon Tf2-6 polyprotein-like Protein 279 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02683 Vimu-Chr8 37506079 37510211 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02683 671 1075 Cytochrome P450 AT4G31940 45.036 7.48e-111 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02683 - - gmx:100802193 592.038