Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02672 ATGTCCTTGCTAACGGTGGCGTACCAAAGGGGCTCAGGTGAGTTTATCCGGTTCACCGCGGATGACGGTGGTGAGGGTGAATATGGTCATGGACATGGTGATGGTAGTGGTGGTTCACCAGGCTTCAATTTTAACCAAGGGATGCAACAACAAGGTGAGGTAACAATGCAAGGTGGTTCTTTGGTTTCAGGGTACAACAGGGGTGATCCAGAGTTGAGGCAAATGGTTTCAGCTTTGACACATGTTGTTTCGTCAGGGTCTGATCAGAGGAGCACCGAATGGATGCAACAAAGTGGTTATCCCATGATGTCAGGTTTCGGACATGCACCTTCTCTTTCTCGTTTGTCTTCTTTCTCTTCCTCTCCTTCTCCTTCTTCTGGTGTTGGTCAGAAAAGAGGGAGAGAAGAACAAGAGACTAATACCTCTTCTTCACATAACCTGATGCAACAACAAACTGCTTCAAGACTCTTCAGAACAACACTTCCTGACTTCATGCTACCTTCTCAAGGAGACTCATCTTCAGTGACTGAAGAAGCTCCCACCTCCACAACTACAACAGTAACAGTAACAGCAGCTGCAGCAACTGCTGTTACTGAAACTACGGCTGGAGATGGGGAAAGGAGGAGAAAGTACAGGGGAGTGAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATCCGTGATCCACACAAAGCAGCACGAGTTTGGCTTGGCACATTTGACACAGAAGAAGCAGCAGCAAGAGCCTATGATGAAGCTGCATTGAGGTTCAGAGGCAACAGGGCAAAGCTAAACTTTCCTGAAAATGTTAGAGCAGTTCCACCTCTTCAACCTTTCCATCCCGCCACAAGACTAACCGTTTCTGACTCCTCCACCACTCAATTCCGACCACTCACCACGGCCATGGCCGCGCCACCCTTCATTCAGCCGCCAAATATGCAAAGCTCCTCTGACTTGATCAGAGACTACTTGCAATACTCTCAGCTTCTACAGAGTGATTTTCAACAGCAGCATCATCAGCCTCAGCTTCATCAACAACAACAACAACCACAACCTTCTAGTTTGCTTCAGCAGTTCTACTACAATGCACAATTGTCTTCTCTTCAATCACCTTCGTTGTTACCGTCATCACCTTCATTCTCTTCTTCTGTGTCACAATCTCCATTCCCGTTATTCTCAACATCTCCTCAATTTTCCTCTGCTTCATTTCCCATGTTTTCAAGTCAACAAATGAGTTATTTCCAGCCACTGGAAAGCCTCCCTCCAGCCGGCGGCAGGCCGGAGATTCCGCCGTCAACATGGTCCGATACCGGTGGCCAGCCACCACCTTCCGGTTGA 1338 0.4828 MSLLTVAYQRGSGEFIRFTADDGGEGEYGHGHGDGSGGSPGFNFNQGMQQQGEVTMQGGSLVSGYNRGDPELRQMVSALTHVVSSGSDQRSTEWMQQSGYPMMSGFGHAPSLSRLSSFSSSPSPSSGVGQKRGREEQETNTSSSHNLMQQQTASRLFRTTLPDFMLPSQGDSSSVTEEAPTSTTTTVTVTAAAATAVTETTAGDGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTEEAAARAYDEAALRFRGNRAKLNFPENVRAVPPLQPFHPATRLTVSDSSTTQFRPLTTAMAAPPFIQPPNMQSSSDLIRDYLQYSQLLQSDFQQQHHQPQLHQQQQQPQPSSLLQQFYYNAQLSSLQSPSLLPSSPSFSSSVSQSPFPLFSTSPQFSSASFPMFSSQQMSYFQPLESLPPAGGRPEIPPSTWSDTGGQPPPSG 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02672 445 PANTHER DNA-BINDING DOMAIN 150 350 IPR044808 GO:0003700|GO:0009873
Vimu8g02672 445 MobiDBLite consensus disorder prediction 105 151 - -
Vimu8g02672 445 Pfam AP2 domain 210 259 IPR001471 GO:0003700|GO:0006355
Vimu8g02672 445 SMART rav1_2 210 273 IPR001471 GO:0003700|GO:0006355
Vimu8g02672 445 MobiDBLite consensus disorder prediction 165 186 - -
Vimu8g02672 445 Gene3D AP2/ERF domain 209 269 IPR036955 GO:0003700|GO:0006355
Vimu8g02672 445 PRINTS Ethylene responsive element binding protein signature 211 222 IPR001471 GO:0003700|GO:0006355
Vimu8g02672 445 PRINTS Ethylene responsive element binding protein signature 233 249 IPR001471 GO:0003700|GO:0006355
Vimu8g02672 445 CDD AP2 210 269 IPR001471 GO:0003700|GO:0006355
Vimu8g02672 445 ProSiteProfiles AP2/ERF domain profile. 210 267 IPR001471 GO:0003700|GO:0006355
Vimu8g02672 445 MobiDBLite consensus disorder prediction 414 445 - -
Vimu8g02672 445 MobiDBLite consensus disorder prediction 164 186 - -
Vimu8g02672 445 MobiDBLite consensus disorder prediction 110 130 - -
Vimu8g02672 445 SUPERFAMILY DNA-binding domain 210 268 IPR016177 GO:0003677
Vimu8g02672 445 FunFam Ethylene-responsive transcription factor 2 209 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02672 Vimu-Chr8 37350451 37352382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02672 207 274 AP2-EREBP Transcription Factor Family AT2G33710 77.941 4.71e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu8g02672 AP2 3.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02672 - - vun:114180418 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02672 8 37350451 37352382 Vimu8g02672 8 37350451 37352382 ECH
Vimu8g02672 8 37350451 37352382 Vimu3g02902 3 43113169 43114334 PCT