Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02670 ATGACTTCTTCATTCTTTCTGGACGCCGATCTTCGTCAAGTGCACCATTTTAGCGGTCTTGGCTCCATTCACGGGGGCATCATCACGTTTTTCGGTTGTACCGTCGATGGGGCTCCAGATCTAGACCGGTGTGCGTCTCTTTGGAATCACTCTCCATGGAAGAGATATGAAGAGAAAAACCCTAAGTCGAATTCCCCCGGACCAGCAGAGGTTGATCTTTGCCGGGAAACCGCTGAAGGATGGTCGTACTCTCGCCGATTACAACATCCAAAAAGGTTTGAAAAATCTCAATTTCGAAATTCTGTGTCGTTTGGCCTTGTTAATTGCTCTAATGCTTTGAATGCGAGCAGGCCTCAAGTATTGTTAATTATGCTCAAATACTTTAGTATAAATGGGGAGACTTATCATTGTGTTGGTTTCTCTACTTTTGCAGAGTCAACATCGCATCTTGTTTTGAGGCTTCGAGGTGGTATTATTGAGCCATCTTTGATGGCATTGGCCAGGAAGTATAACCAGGATAAGATGATCTGCCGCAATGGAGATGTTTCAGTGAATGGTGGGCAGAAAATTGAACAAAAGAAGAAATCTTTCTTCACCGATTTGGGTCCATTAAAAGAAACAGAACGTCAAGATCTTAACTGTTCTCTGTCAAACATCTTTACTCTTCATGATGTTCCAAACATTTGGCATATTCCTTTGCTATTGAAATTCCATGAGGTTTTGGTGATAGAGGAGTACAAGGGAAAATTCTTATGGCTAATGATAGCTGTAGTGATAGCTGAAGCTCTTGATTTGATGCAAGAAATTGGGGTCAGTGGTGATGTTGAAACTTTTGGTGCCGTGGCCAAGATCGAAAAGATTGCATTCAGCCTTGAACAAGATTTTGAAAAAGAGACTGCTATGGCTGAAGAACTCAGTGAAGAACTCATACTGCAAATTCTGTCATGGCTTCCTGTGACGAGTCTCATCAGATTCAGGTGCGTTTCAAAGACATGGAAATTTCTTATATCCAATCCTTATTTGGTGAAATTGCACCTTGAGAGGTCTTCCAGAAACCTAGAATTCCTCCTCTCACTGGTGACACATAGATTGAAGAGGAAACTTTTCTTGCCTGGTATAGGATCTTCACCTTTCATAGCTCGTTTTGGCTCTTTACCATTTTTAATCCAAAACCCTGCACCCTCTCTTGATCGTATCTTGCGATGCCCCGAACACTATAATTGTGTAATCGGTTCTTGCAATGGTTTGCTTTCTCTACATGACTCTCTTTACACAAATGAGTACCAAGAGCATTGGGTGTGCTTTTGGAACCCTGCAACCAAAATTTGCTCCAGACCTTCACCAAGATTGCGTCTCAATTTCGGCTTTGTTTTACCAGATGGTCTCGGCGCTGGTCTTCTCATTTATGTGAATTTTGGGTTTGTGTACGATGATTGGAGGGACAGTTACAAGGTGCTGGCAATGGTTAGTGATCCGAGTACATATCAAACGAGTGTGTGGGTTTACAGCATGAATGACATATGTTGGAGACGTTCTTCAATGATCTCTATGGGTTTTAGCACTTTAGACCATAATGGATGCTTTGTGAATGGCACTGTTAACTGGATAGGACATCCTTTCAAAGAAGAACGTGACTATAAGGAACAAAAAATATTTTCATATGATCTAAATAACGATACTTGCATATGTTTGTCGCTGCCTAAACTCGTCCCCTATGATCGTGGTTATGCTAGTATGAGTGTTTGGAATGGTTATCTTTGTATTTTTTTAAGTATGTTAGAAAGCTTGGCTGTATTGGCATCGAGGGACGTTCGAGACGAAACATCTTGGAGTCGGTTGATAAGTGTAAGTTACGAAACTCTGAATGTCTGTGTTGGTGGTAACCATAGGCTACAGATTCTATGCATGTGGGGTGATCTTCTGTTGCTCATATATGAGGAGTTAGGAGATCCTTACAGTGTCATCATTATCTTTAATTCGAAGGAGAATAAAGTAGAGCGTATTGAAGGTTACAACACAGAGTTTATCACTGACATCTTTTCGTATGTTCCAAGCTTGATTTCGCCTATTTGA 2073 0.412 MTSSFFLDADLRQVHHFSGLGSIHGGIITFFGCTVDGAPDLDRCASLWNHSPWKRYEEKNPKSNSPGPAEVDLCRETAEGWSYSRRLQHPKRFEKSQFRNSVSFGLVNCSNALNASRPQVLLIMLKYFSINGETYHCVGFSTFAESTSHLVLRLRGGIIEPSLMALARKYNQDKMICRNGDVSVNGGQKIEQKKKSFFTDLGPLKETERQDLNCSLSNIFTLHDVPNIWHIPLLLKFHEVLVIEEYKGKFLWLMIAVVIAEALDLMQEIGVSGDVETFGAVAKIEKIAFSLEQDFEKETAMAEELSEELILQILSWLPVTSLIRFRCVSKTWKFLISNPYLVKLHLERSSRNLEFLLSLVTHRLKRKLFLPGIGSSPFIARFGSLPFLIQNPAPSLDRILRCPEHYNCVIGSCNGLLSLHDSLYTNEYQEHWVCFWNPATKICSRPSPRLRLNFGFVLPDGLGAGLLIYVNFGFVYDDWRDSYKVLAMVSDPSTYQTSVWVYSMNDICWRRSSMISMGFSTLDHNGCFVNGTVNWIGHPFKEERDYKEQKIFSYDLNNDTCICLSLPKLVPYDRGYASMSVWNGYLCIFLSMLESLAVLASRDVRDETSWSRLISVSYETLNVCVGGNHRLQILCMWGDLLLLIYEELGDPYSVIIIFNSKENKVERIEGYNTEFITDIFSYVPSLISPI 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02670 690 Coils Coil 288 308 - -
Vimu8g02670 690 SMART fbox_2 305 345 IPR001810 GO:0005515
Vimu8g02670 690 SUPERFAMILY Kelch motif 433 590 IPR015915 GO:0005515
Vimu8g02670 690 CDD F-box_AtFBW1-like 303 340 - -
Vimu8g02670 690 Pfam Ribosomal L40e family 159 179 IPR001975 GO:0003735|GO:0005840|GO:0006412
Vimu8g02670 690 NCBIfam F-box protein interaction domain 412 658 IPR017451 -
Vimu8g02670 690 SUPERFAMILY F-box domain 301 411 IPR036047 GO:0005515
Vimu8g02670 690 Gene3D - 285 370 - -
Vimu8g02670 690 Pfam F-box domain 304 341 IPR001810 GO:0005515
Vimu8g02670 690 Gene3D - 158 180 IPR038587 -
Vimu8g02670 690 SMART Ribosomal_L40e_3 158 197 IPR001975 GO:0003735|GO:0005840|GO:0006412
Vimu8g02670 690 PANTHER OS09G0372900 PROTEIN-RELATED 312 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02670 Vimu-Chr8 37232045 37238236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02670 145 178 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 94.118 4.43e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02670 - - vra:106764904 724.931