Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02656 ATGGCCGCTTCCACCATGGCTCTCTCCTCGCCATCATTGGCTGGTCAAGCCATAAAGCTGTCTCCTTCCACCCCGGAGCTCTCCAGTGGAAGGATTTCGATGAGGAAGACGGCCTCCAAGTCGGTTTCCTCTGGAAGCCCATGGTACGGCCCAGACCGTGTTAAGTACCTGGGCCCATTCTCGGGTGAGGCTCCTTCTTACCTGACGGGGGAATTCCCAGGTGACTATGGGTGGGACACTGCCGGGCTTTCTGCTGACCCGGAGACATTTGCTCGAAACCGTGAATTGGAAGTGATCCACTCTCGATGGGCGATGTTGGGGGCTTTGGGGTGTGTGTTCCCTGAACTGTTGGCCCGGAACGGTGTGAAGTTCGGGGAGGCGGTGTGGTTCAAGGCTGGGTCTCAGATATTCAGTGAGGGTGGGCTTGACTACTTGGGCAACCCAAGCCTGATCCATGCACAGAGCATCCTTGCCATATGGGCCACACAGGTGATATTGATGGGTGCAGTGGAGGGTTACCGCATTGCCGGTGGGCCTTTGGGTGAGGTGACTGACCCAATCTACCCGGGTGGAAGCTTCGATCCATTGGGCCTTGCTGATGACCCAGAGGCCTTTGCTGAATTGAAGGTGAAAGAGTTGAAGAATGGGAGATTGGCCATGTTCTCCATGTTTGGTTTCTTCGTTCAAGCCATTGTCACTGGCAAGGGACCTTTGGAAAACCTCGCTGATCACCTTGCCGACCCTGTCAACAACAACGCTTGGGCCTACGCCACCAACTTTGTCCCTGGAAAGTGA 795 0.556 MAASTMALSSPSLAGQAIKLSPSTPELSSGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02656 264 Pfam Chlorophyll A-B binding protein 64 230 IPR022796 -
Vimu8g02656 264 Gene3D Chlorophyll a/b binding protein domain 55 257 - -
Vimu8g02656 264 SUPERFAMILY Chlorophyll a-b binding protein 47 261 - -
Vimu8g02656 264 FunFam Chlorophyll a-b binding protein, chloroplastic 55 257 - -
Vimu8g02656 264 MobiDBLite consensus disorder prediction 19 45 - -
Vimu8g02656 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 264 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02656 Vimu-Chr8 36997368 36999402 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02656 1 264 Chloroplast and Mitochondria Gene Families AT1G29930 88.764 1.27e-173 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02656 K08912 - ccaj:109815895 531.561