Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02645 ATGGCAGCTTCCACCATGGCTCTCTCTTCGCCATCACTGGCTGGAAGGATTTCGATGAGGAAGGCGACCTCCAAGTCCGTTTCCTCTGGAAGCCCATGGTACGGCCCAGACCGTGTCAAGTACCTGGGCCCATTCTCAGGTGAGGCTCCTTCTTACCTGACGGGAGAATTCCCAGGAGACTATGGGTGGGACACTGCCGGGCTTTCGGCTGACCCGGAGACATTTGCTCGGAACCGTGAACTGGAAGTGATCCACTCTCGATGGGCGATGGAGGCCGTGTGGTTCAAGGCTGGGTCTCAGATATTCAGTGAGGGTGGGCTTGACTACTTGGGCAACCCAAGCCTGATCCATGCACAGAGCATCCTTGCCATCTGGGCCACACAGGTGATATTGATGGGTGCAGTGGAGGGTTACCGCATTGCCGGTGGGCCTTTGGGTGAGGTGACTGACCCAATCTACCCGGGTGGGAGCTTCGACCCATTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAGTTGAAGGTGAAAGAGTTGAAGAATGGGAGATTGGCCATGTTCTCCATGTTTGGTTTCTTCGTTCAAGCCATTGTCACTGGCAAGGGACCTTTGGAGAACCTCGCCGATCACCTTGCCGACCCCGTCAATAACAACGCCTGGGCCTACGCCACCAACTTTGTTCCTGGAAAGTAA 690 0.558 MAASTMALSSPSLAGRISMRKATSKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02645 229 Pfam Chlorophyll A-B binding protein 49 195 IPR022796 -
Vimu8g02645 229 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 91 229 IPR001344 GO:0009765|GO:0016020
Vimu8g02645 229 Gene3D Chlorophyll a/b binding protein domain 40 92 - -
Vimu8g02645 229 Gene3D Chlorophyll a/b binding protein domain 93 222 - -
Vimu8g02645 229 FunFam Chlorophyll a-b binding protein 3A, chloroplastic 112 222 - -
Vimu8g02645 229 SUPERFAMILY Chlorophyll a-b binding protein 32 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02645 Vimu-Chr8 36878548 36879342 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02645 1 229 Chloroplast and Mitochondria Gene Families AT2G34430 78.571 6.59e-145 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02645 K08912 - ccaj:109815895 441.81