Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02642 ATGGCAGCTTCCACCATGGCTCTCTCTTCGCCATCACTGGCTGGTCAACCCATAAAGTTGTCTCCTTCCACCACGGAGCTCTCCGCTGGAAGGATTTCGATGAGGAAGACGGCTTCCAAGTCGGTTTCTTCTGGAAGCCCATGGTATGGGCCAGACCGTGTGAAGTACCTGGGCCCATTCTCGGGTGAGGCTCCTTCTTACCTGACGGGGGAATTCCCAGGTGACTATGGGTGGGACACTGCCGGGCTTTCGGCTGACCCGGAGACATTTGCTCGGAACCGTGAACTGGAAGTGATCCACTCTCGATGGGCGATGTTGGGGGTTTTGGGGTGTGTGTTCCCTGAACTGTTGGCCCGGAACGGTGTGAAGTTCGGGGAGGCAGTGTGGTTCAAGGCTGGGTCTCAGATATTCAGTGAGGGTGGGCTTGACTACTTGGGCAACCCAAGCCTGATCCATGCACAGAGCATCCTTGCCATATGGGCCACACAGGTGATATTGATGGGTGCAGTGGAGGGTTACCGCATTGCTGGTGGGCCTTTGGGTGAGGTGACTGACCCAATCTACCCGGGTGGAAGCTTCGATCCATTGGGCCTTGCTGATGACCCAGAGGCCTTTGCTGAATTGAAGGTGAAAGAGTTGAAGAATGGGAGATTGGCCATGTTCTCCATGCTTGGTTTCTTCGTTCAAGCCATTGTCACTGGCAAGGGACCTTTGGAGAACCTTGCTGATCACCTTGCTGACCCTGTCAACAACAACGCCTGGGCCTACGCCACCAACTTTGTTCCTGGAAAGTGA 795 0.5509 MAASTMALSSPSLAGQPIKLSPSTTELSAGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGVLGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMLGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02642 264 FunFam Chlorophyll a-b binding protein, chloroplastic 55 257 - -
Vimu8g02642 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 264 IPR001344 GO:0009765|GO:0016020
Vimu8g02642 264 Pfam Chlorophyll A-B binding protein 64 230 IPR022796 -
Vimu8g02642 264 SUPERFAMILY Chlorophyll a-b binding protein 47 261 - -
Vimu8g02642 264 Gene3D Chlorophyll a/b binding protein domain 55 257 - -
Vimu8g02642 264 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02642 Vimu-Chr8 36841355 36846470 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02642 1 264 Chloroplast and Mitochondria Gene Families AT1G29930 87.266 1.37e-171 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02642 K08912 - ccaj:109815895 521.546