Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02615 ATGTCCTTCCGCAGCATTGTTCGTGATGTGAGGGACGGGATTGGAAGCTTGTCAAGGCGCAGTTTTGACTTGAGGTTTTCTGGTGGCAGCAAGTCGAATAGTTCAGTCCATGAGGTGCATGAACGCCCTCCTGTTATACAGAATAGCAGGTGGGCTAGCCTTCCCCCTGAGCTTCTTCGCGATGTTATTAGAAGATTGGAAGAAAGTGAGACAACATGGCCTTCTCGGAAGCATGTGGTTGCATGTGCTGCAGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTACCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCAGTCTCCCTGAAGCAGCCTGGTTCAAGGGATGGGGCCATTCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACATACCACCTATTCCTTTGTCTGAGTCCTGCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAAAGGACCAGAAGAACGACTTGCACAGAGTATATTATATCAATGGACGCGGACAACATATCAAGATCCAGTAGCACTTACATTGGAAAACTGAGGTCTAATTTTCTTGGCACCAAGTTCATAATTTATGATACACAGCCTCCCTACAACAACTCTCAATTGTCTCCTCCAGGTCGAAGCCGAAGGTTTAATTCCAAAAAGGTTTCTCCCAAGGTTCCTAGTGGCAGCTACAATATTGCCCAGATCACCTATGAGTTGAATGTCCTTGGTACTAGGGGCCCCCGCAGGATGAACTGCACAATGCACTCAATCCCTGTATCAGCCCTTGAGCCTGGTAGCACCGTGCCTGGCCAGCCGGAGCTTCTTCCGCGCTCGCTTGAAGATTCCTTCAGGAGCATATCCTTTGCTAGATCAATTTATAGCTCAACTGATTTTAGCAGTTCTAGATTCTCAGACATAGTTGTGGCAGGCAATGAAGAGGAGCAAGGAAAGGACATGCCTTTAGTTCTTAAAAACAAAGCTCCAAGATGGCATGAGCAGCTGCAGTGTTGGTGCCTCAACTTCAGGGGAAGGGTGACTGTTGCATCTGTAAAGAATTTCCAGTTGATTGCTGCAACACAGCCACCTGCAGCCGGTGGTGGTGCTCCTCCTCCACCGCCACCATCATCACAGCCACCTCAGTCTGATCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGACATCTTTACTATGGACTATAGATATCCCCTTTCTGCATTTCAAGCTTTTGCCATTTGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAG 1290 0.4659 MSFRSIVRDVRDGIGSLSRRSFDLRFSGGSKSNSSVHEVHERPPVIQNSRWASLPPELLRDVIRRLEESETTWPSRKHVVACAAVCKSWREMCKEIVTSPEFCGKITFPVSLKQPGSRDGAIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNSQLSPPGRSRRFNSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCTMHSIPVSALEPGSTVPGQPELLPRSLEDSFRSISFARSIYSSTDFSSSRFSDIVVAGNEEEQGKDMPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPAAGGGAPPPPPPSSQPPQSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLTSFDTKLACE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02615 429 FunFam Tubby-like F-box protein 108 429 - -
Vimu8g02615 429 PANTHER TUBBY-RELATED 29 427 - -
Vimu8g02615 429 SUPERFAMILY Tubby C-terminal domain-like 100 429 IPR025659 -
Vimu8g02615 429 Pfam Tub family 112 424 IPR000007 -
Vimu8g02615 429 CDD F-box_AtTLP-like 51 95 - -
Vimu8g02615 429 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Vimu8g02615 429 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Vimu8g02615 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Vimu8g02615 429 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Vimu8g02615 429 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Vimu8g02615 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Vimu8g02615 429 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Vimu8g02615 429 SUPERFAMILY F-box domain 44 95 IPR036047 GO:0005515
Vimu8g02615 429 MobiDBLite consensus disorder prediction 205 226 - -
Vimu8g02615 429 Gene3D - 46 98 - -
Vimu8g02615 429 MobiDBLite consensus disorder prediction 363 386 - -
Vimu8g02615 429 Gene3D Tubby Protein; Chain A 108 429 IPR025659 -
Vimu8g02615 429 Pfam F-box domain 51 97 IPR001810 GO:0005515
Vimu8g02615 429 MobiDBLite consensus disorder prediction 367 382 - -
Vimu8g02615 429 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Vimu8g02615 429 FunFam Tubby-like F-box protein 46 99 - -
Vimu8g02615 429 ProSitePatterns Tub family signature 2. 414 429 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02615 Vimu-Chr8 36149836 36152315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02615 1 429 TUB Transcription Factor Family AT1G76900 69.499 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vimu8g02615 Tub 1.1e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02615 K19600 - gmx:100803729 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02615 8 36149836 36152315 Vimu8g02615 8 36149836 36152315 ECH
Vimu8g02615 8 36149836 36152315 Vimu3g02933 3 43378365 43380863 PCT