Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02612 ATGAATGGACGCAGGAAACTGGAGGGGCTTGGATATCATCGAAGTGCAAAGAAATGCAAGGAAAAGTTTGAGAACGTGTACAAGTACAACAAGAGAACCAAAGAAAACAAAAGTGGGAAATCACATGGAAAAACCTATAAATTCTTTGATCAATTACAAGCCCTTGAGAATCATCATTTCACGATCTCTTACCCAACAAAGCCACAATCTACTTTGGCAACAACAAACACATTGACGTTGCCAGCTAGACAAAGTGATCATGGTAACAACAATGTTATCTCTTATGTCACACCTTTTCCTTCCACAAACCCTACACACATTTCTCCTTCACCACAAACCAATACCGACACCAACACAAACAACACCACAGTATCCACAACCAACCCTAGAGACACAACACCACCACAAACCACCACCAACAACACCAACAATGACAATGTCACGTATTCTTTGCCAAACATGAACACCCCTTTCTCAACCACAACCACCACCTCCACCTCTTCTTCCACAGCATCTGATGAAGACTTGGAAGAGAGGTACCGGAGGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACTAGGAAGGTCCTCTTGAAGCAAGAGGAGATGCAGAAGAAGTTCTTGGAAGCCATGGACAAAAGGGAGAGGGAAAGAGTGGCACAACAAGACAATTGGAGGATCCAAGAGATGGCAAGGATTAACAGGGAACATGAGATTCTTGTTCAGGAGAGATCAACAGCAGCAGCCAAAGATGCTGCAGTCATTGCATTATTGCAGAAGATGTACGGCCAGCAAAACACCACACAACAACATGTTCAAGTTCAGCCACCAGAACAACAGAATCAAACAACGTTAACACCAATGCCGAACAATAATTTTGAGATGAAGAAATTGAATAATGGTCATCACAGTGCTACCAGTACTAGCACCACTACTGTCACTACTTCTCCCGCGACTTCTTCTTCTTCTAGATGGCCAAAGGCTGAAGTTCATGCTTTGATAAGGTTGAGGACAAGTCTGGACACCAAGTACCAAGAAAATGGACCAAAAGCTCCATTGTGGGAAGATATATCGATCGCAATGCAGAGGCTTGGTTACAACCGGAGTGCAAAGAGATGCAAGGAAAAGTGGGAGAACATCAACAAGTACTTCAAAAAAATGAGGGAGAATAACAAAGAAAGGCGTGAAAATAGCAAAACATGTCCTTATTTTCACGAGCTTGATGCTATATACAAGGAAAAGAGCTTATCCCAGAACCCCTTTGGCGTGTTCCAGAACATGAAGCCGAACGAGATGATGATGATGGAGCCATTGATGGTGCAGCCGGAGCAGCAATGGAGGCCTCCACCCCAATCGTTGGAAGAGGGTATAGAGAAGAACTCTAGCGATGAATATCAAGAAAAAGAAGAAGAAAACGATGGTGATGATGATGATCACGTTGCTGTTGAAGAAGATGAAGATGGTGTGGAAGATGATGCGTGTGAGACTGGGACAAATGATTAA 1506 0.4349 MNGRRKLEGLGYHRSAKKCKEKFENVYKYNKRTKENKSGKSHGKTYKFFDQLQALENHHFTISYPTKPQSTLATTNTLTLPARQSDHGNNNVISYVTPFPSTNPTHISPSPQTNTDTNTNNTTVSTTNPRDTTPPQTTTNNTNNDNVTYSLPNMNTPFSTTTTTSTSSSTASDEDLEERYRRKRKWKDYFRRLTRKVLLKQEEMQKKFLEAMDKRERERVAQQDNWRIQEMARINREHEILVQERSTAAAKDAAVIALLQKMYGQQNTTQQHVQVQPPEQQNQTTLTPMPNNNFEMKKLNNGHHSATSTSTTTVTTSPATSSSSRWPKAEVHALIRLRTSLDTKYQENGPKAPLWEDISIAMQRLGYNRSAKRCKEKWENINKYFKKMRENNKERRENSKTCPYFHELDAIYKEKSLSQNPFGVFQNMKPNEMMMMEPLMVQPEQQWRPPPQSLEEGIEKNSSDEYQEKEEENDGDDDDHVAVEEDEDGVEDDACETGTND 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02612 501 MobiDBLite consensus disorder prediction 443 501 - -
Vimu8g02612 501 MobiDBLite consensus disorder prediction 98 179 - -
Vimu8g02612 501 Gene3D - 326 387 - -
Vimu8g02612 501 MobiDBLite consensus disorder prediction 468 495 - -
Vimu8g02612 501 FunFam Trihelix transcription factor GT-2 326 387 - -
Vimu8g02612 501 CDD GT1 325 389 - -
Vimu8g02612 501 ProSiteProfiles Myb-like domain profile. 324 382 IPR001005 -
Vimu8g02612 501 MobiDBLite consensus disorder prediction 300 325 - -
Vimu8g02612 501 PANTHER FI21293P1 6 469 - -
Vimu8g02612 501 MobiDBLite consensus disorder prediction 98 171 - -
Vimu8g02612 501 Pfam Myb/SANT-like DNA-binding domain 5 55 IPR044822 -
Vimu8g02612 501 Pfam Myb/SANT-like DNA-binding domain 324 411 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02612 Vimu-Chr8 35734067 35735572 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02612 5 447 Trihelix Transcription Factor Family AT1G76880 46.570 5.59e-109 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu8g02612 Myb_DNA-bind_4 2.5e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02612 - - gmx:100776819 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02612 8 35734067 35735572 Vimu3g02935 3 43400516 43403230 PCT