Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02608 ATGCTGGGGGACTCAGCAGTGTTGGGAACAGGTGGAGGAGGAGGGTCTGGAGATGCAGTGGTGGCAGCAGGAGGGGGTGCTGTTCATGAGGGTGCTGTTGACGTGGCAGGCGGTGGTGGCGGCGGTGGTGGAGGAGGATCAAATTCAGGGGATGATGAGAGGGGGAGAGTGGAGGAAGGTGACAGGAGCTTTGGTGGGAACAGATGGCCGAGACAAGAGACTCTGGCTTTGTTGAAGATACGGTCGGATATGGACGTGGCTTTCAGAGATGCAAGTGTGAAGGGTCCTTTGTGGGAAGAGGTTTCAAGGAAGCTGGCAGATCTTGGCTACCACAGAAATGCCAAGAAGTGCAAAGAGAAGTTCGAGAACGTTTACAAGTACCACAAGAGAACCAAAGAAGGCCGCAGTGGGAAATCAGAAGGCAAAACTTATCGCTTCTTTGATCAATTACAAGCCCTTGAAAACAACCCTGCAATTCATCCTATCCAATCTCCAACACCACCTTCCAAGCCACCACCAGTATCAACAACAATAACAACAGCACTACCAGCAACACCAGTGTCAATAGTCGTAACAACCACACCCTCTTCAATAATGTCTCTTCCCCCGACCACAACGCTCCCATTGCCACCTGTGTCTAACAACACCACTGTTCCATCACCAACAACACTCCCTGTGCCTCAAGCCATTCTCGCCCTCACAACCTCTTCCTTCCCATCATCAAACCCTACACCATACTTCCCAACACAAACACCAAACCCTACACCCAACAACACCAACACCAAGAACCCTCTAAACACCATCGCCCCACCTTCCTTCCCCAACATTCCGACTGATCTCTTGTCCAATTCCAGCTCTTCCTCCACCTCTTCGGAGGAAACAACCACGGAGGGAGGGGGAGCAAGACGCAAGAGAAAGAGGAAGTGGAAGGACTTCTTTGAGAGACTCATGAAGGAAGTTATAGAGAAACAGGAGGAGCTGCAAAGGAGGTTCCTGGAGGCCATTGAGAAGAGAGAACAAGAGCGTGTCGCTAGAGAAGAAGCGTGGAGAATGCAAGAGATGCAAAGGATCAACAGGGAAAGGGAGATTCTTGCACAGGAGAGATCCATTGCTGCCGCTAAAGACGCTGCTGTTATGGCATTTTTGCAGAAGATGGCCGAACATCAACAAGAGGAAAATAATCTTCAACCAGCATTGAATACCAACAACAACATCATCGCTATTGCTCCACAGCAACCGATGCCACAAGTAACTCCAACACCAACACCACAGCAAAAACAAACAACAACTGTTCCCGAGGCCCCACCAGTGCAGTCCTTGGTCCCACAGCCACAGCAACATCAGGTGCAGCAACAACAACAACTAGTGATGACTAATGTGGAAACCAATAAAGCTGATAATAACGGTGAGAATTTGATGATGGGAGCGAGTTCTTCGCGGTGGCCAAAAGTGGAGGTACAAGCGCTGATAGATCTGAGAACAAACCTGGAAACAAAGTACCAGGAAAATGGACCAAAAGGGCCTCTGTGGGAGGAGATCTCAGCTTTGATGAGGAAAATGGGGTACAACCGGAACGCGAAAAGATGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTCAAGGAAAGCAACAAGAAGAGGCCCGAAGATTCCAAGACCTGTCCCTATTTTCACCAGTTGGAGGCTTTATACAAGGAGAAGAACAAGGTGGAGGGCCAAATGAAGCCGGAGAGCATGATGGCACCCCTCATGGTGCAGCCGGAGCAACAGTGGCCTCCTCAGCAGGTGGTGCCCCCAGAAGTAACCATGGAAGACGCCCAGAATGACCCCATGGACGGGGGGCACCACGAGGATGGTGAGGAGGAGGAGGAGGAGGACAAGGAGATTGGAGATGAAGATGATGATGAAGACGATGAAGGTGGTAACTATGAGATAGTAGCAAGCAAGCCAGCTTCGGCTGGTGATGCTTCTGCCGAAGGGTGCACGGGTTGTCGGAAAAATGGTGGCGTGAGGGTGAATTCTGGTAGTAGTGGTGGTGGAGGACGAATGACACATGGGTATAGGGTTATAGCCAGTAGGGTGGGGGAATCTGGGTTGGAAGTACTTGGTACAATAGCAGCATATAGTCAAGGGAAGATTAAGATAGAGAAAGGTTCAGACTTGAGAGGTTCAAGTTCAACATATATGAATAAACAAGCAACCTTGATCAATGTTATTGGCCCTTCCCGTAGCAGAAAATGCCAGCATCACACATGGAGTCATAAACCCTTGATGGAGGGTCCACCAGGAGGAATCTTTCGAGGTGTGAGCAAACATCACAGTGTGAAGAGCCAAAAACACTGTACACGGTAA 2361 0.4968 MLGDSAVLGTGGGGGSGDAVVAAGGGAVHEGAVDVAGGGGGGGGGGSNSGDDERGRVEEGDRSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLADLGYHRNAKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALENNPAIHPIQSPTPPSKPPPVSTTITTALPATPVSIVVTTTPSSIMSLPPTTTLPLPPVSNNTTVPSPTTLPVPQAILALTTSSFPSSNPTPYFPTQTPNPTPNNTNTKNPLNTIAPPSFPNIPTDLLSNSSSSSTSSEETTTEGGGARRKRKRKWKDFFERLMKEVIEKQEELQRRFLEAIEKREQERVAREEAWRMQEMQRINREREILAQERSIAAAKDAAVMAFLQKMAEHQQEENNLQPALNTNNNIIAIAPQQPMPQVTPTPTPQQKQTTTVPEAPPVQSLVPQPQQHQVQQQQQLVMTNVETNKADNNGENLMMGASSSRWPKVEVQALIDLRTNLETKYQENGPKGPLWEEISALMRKMGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLEALYKEKNKVEGQMKPESMMAPLMVQPEQQWPPQQVVPPEVTMEDAQNDPMDGGHHEDGEEEEEEDKEIGDEDDDEDDEGGNYEIVASKPASAGDASAEGCTGCRKNGGVRVNSGSSGGGGRMTHGYRVIASRVGESGLEVLGTIAAYSQGKIKIEKGSDLRGSSSTYMNKQATLINVIGPSRSRKCQHHTWSHKPLMEGPPGGIFRGVSKHHSVKSQKHCTR 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02608 786 MobiDBLite consensus disorder prediction 51 66 - -
Vimu8g02608 786 Pfam Myb/SANT-like DNA-binding domain 67 153 IPR044822 -
Vimu8g02608 786 Pfam Myb/SANT-like DNA-binding domain 479 566 IPR044822 -
Vimu8g02608 786 MobiDBLite consensus disorder prediction 253 296 - -
Vimu8g02608 786 Gene3D - 481 542 - -
Vimu8g02608 786 Gene3D - 69 130 - -
Vimu8g02608 786 PANTHER FI21293P1 45 612 - -
Vimu8g02608 786 SMART sant 477 539 IPR001005 -
Vimu8g02608 786 SMART sant 65 127 IPR001005 -
Vimu8g02608 786 MobiDBLite consensus disorder prediction 753 786 - -
Vimu8g02608 786 ProSiteProfiles Myb-like domain profile. 479 537 IPR001005 -
Vimu8g02608 786 FunFam Trihelix transcription factor GT-2 69 130 - -
Vimu8g02608 786 CDD GT1 479 544 - -
Vimu8g02608 786 Coils Coil 310 341 - -
Vimu8g02608 786 MobiDBLite consensus disorder prediction 1 68 - -
Vimu8g02608 786 MobiDBLite consensus disorder prediction 607 683 - -
Vimu8g02608 786 ProSiteProfiles Myb-like domain profile. 67 125 IPR001005 -
Vimu8g02608 786 MobiDBLite consensus disorder prediction 421 439 - -
Vimu8g02608 786 MobiDBLite consensus disorder prediction 415 439 - -
Vimu8g02608 786 FunFam Trihelix transcription factor GT-2 481 542 - -
Vimu8g02608 786 MobiDBLite consensus disorder prediction 619 644 - -
Vimu8g02608 786 CDD GT1 67 132 - -
Vimu8g02608 786 MobiDBLite consensus disorder prediction 249 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02608 Vimu-Chr8 35590012 35593989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02608 65 593 Trihelix Transcription Factor Family AT1G76890 48.080 3.20e-144 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu8g02608 Myb_DNA-bind_4 6.1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02608 - - gmx:100804788 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02608 8 35590012 35593989 Vimu8g02608 8 35590012 35593989 ECH
Vimu8g02608 8 35590012 35593989 Vimu3g02936 3 43419362 43422239 PCT