Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02577 ATGATGATGTGTAGGAACTTGGTCGATAAGCTAATGCATCAGTACAAAGTGTACGAACATGAGAATCCTAGGGCTAAGAATAAGAATAAAGCTCTGCTGGAAGCAACAATGATAATGAGAAGAGAGCATCAATGGGAGAACAATCAAAAGTGCGTGGAACATATACTAGGAATCGATGTGGGTGATATTTTTCAATACTGGGTTGAACTCAATGTCATTGGCCTCCATAGGCAGTTTTGGAATGGAATTGATTATAAGATAATGGACAATAGCTTGTTGGCCATAAGCATTGTGGTAACAAATCGCTATGATGATGTTAGAAGATCTAATGGTACCTTGGTTTATGAAGGTCAAGGAGGAAATCCTACTATTGGAGAAATGTTTCACTGA 390 0.3821 MMMCRNLVDKLMHQYKVYEHENPRAKNKNKALLEATMIMRREHQWENNQKCVEHILGIDVGDIFQYWVELNVIGLHRQFWNGIDYKIMDNSLLAISIVVTNRYDDVRRSNGTLVYEGQGGNPTIGEMFH 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02577 129 Pfam SAD/SRA domain 53 121 IPR003105 -
Vimu8g02577 129 ProSiteProfiles YDG domain profile. 53 129 IPR003105 -
Vimu8g02577 129 SUPERFAMILY PUA domain-like 35 124 IPR015947 -
Vimu8g02577 129 Gene3D - 34 127 IPR036987 -
Vimu8g02577 129 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 4 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02577 Vimu-Chr8 34964863 34965252 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02577 47 121 Su(var)3-9 homologs AT1G73100 44.304 1.07e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02577 - K11420 vra:106770189 233.032