Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02564 ATGTTGACGTTTCAGGGCAAGTTAGTTCCTTTGGTCAATTTTTTTCCTATACGCCGCCTTGCTCTTCCAATCAACAGGAATATGGATGCACAAGCCAAGAAAAAGGCTTTGTTTCGTGCTAAATTGAATGCCCAGAAGAAGGAGAAGCGTATAGAATCTCCCCTTGTGAGGTTGGTACTTGTGTACAATATCCATATTTTGTTAGGGGCTGGAAAATATATGATAGGGACTGGAAAGTGTAGGAGAGGAAGAGGTATAGGAGAGAAGGAGAATAGAACCGAACGAAGCGGGAACCGAACGGTAGAAGCGGGAACCGAACGGTATAATGAATTTGATCAACCTGTTTGCCGGGTTTGTGATGTTGTTCTGAAGTCCGAGTCTTTATGGGATGCACACCAAGTTTCTCGTAAGCATCGTGAGGCAATAAATAATCTGAAAGCTAATGCAGCTGGATTAACTCAACAAAATAATGCAAAGCCTGTTTCAGATGCCAACATTCCCAAGGCTAAACCAGAACATCCTTTGGGCTCACAATCGAAACTTCCAGAAAGTTCACGAGAAGTGTCTAAACATCAATCTTCGTCAGTGCTTCCACCAGGTTTTTTTGATGACAATGATTCAGGAAAGAAAATTTCTGACCATTTAGCAGACTCTGATTTAGGTAGAAAACCTGCGGTTTCTGCTCAAAATCAGGCGTTAAACTTCAAGAAGGAGAAAGGTCATTTTCATGACAATAGTGCTGCAGAGTCAAATGTTAGCGAGGCCTCAACGGAGAGTAAGCAGACATCAGTTAATAGTACCGATACAGAGATCAAGCAAGTAAAAGGGAGTCTGCCTGAAGGATTTTTTGACAATAAGGAAGCTGATTTGCGTGCCCGTGGCATAAAGCTTGTAAAGCCAGATGTCAAGTATAGGGATTCATTTTCTTATATGGCTTCGTTAAAGCGAGGGTGCACTTTAGAGAGTATAGTGCAACCTCTGATTGAGGTGCAGAAAACTTCCCATAGTGCACTTTATGGATGCACCCCTCACTCTAGAGGAAACTTTTGTTCTTCTCTATTCTGTGGAATATGTATATCGTTAAATGGTTTGGAACTTAAAATGACATTGAATTCTTTAAAATCTTCTCTTAGAGACGAGTACAAGGAATTTGAGAAGTTGATTCAAGAAGATTTGCAGGAGGTTGACAACAGGTTGGAGGAAGAAGAGATTGATGCGGCCGAAATGATAGAGGAAGCTGAATCTGTAGAGCAGAAGATCTTCAGGGAGAAAGTGGAAATGTTGAAGAAGAGGAGATTGGATCTAAAAGCTGCTAATGCTGCAAAGCGTAATAAATCATCTGAGGTTGTAGCCAAGGAATCTACACACGAAGACTCATCCAGTGATGATGAAAGTGAAGAAAATTTTGCCCCCATATCAGATTTTGGACATTATGGTCAAATTTGGGCTGAGTATGGGCTTTATGGTCAAATTTGGGCTGATGAAGCTTATGATCAAGAGTTGAAGTTTCTTGTGCCCTTCACTGACGGTAGTGAACTACGTGATCTCCTTGATTCTCCATCCAAAGTGGAGATACTTAGGAGCAAGGCCAATCCTTGTCAGTTCTTTTTGGAGATAGTTAAACATTTTGAAAACTACATCACATTCGCGTATTTGATTAAGGGTACTGCCTTCGGGCAGGCGTTGTAG 1689 0.4139 MLTFQGKLVPLVNFFPIRRLALPINRNMDAQAKKKALFRAKLNAQKKEKRIESPLVRLVLVYNIHILLGAGKYMIGTGKCRRGRGIGEKENRTERSGNRTVEAGTERYNEFDQPVCRVCDVVLKSESLWDAHQVSRKHREAINNLKANAAGLTQQNNAKPVSDANIPKAKPEHPLGSQSKLPESSREVSKHQSSSVLPPGFFDDNDSGKKISDHLADSDLGRKPAVSAQNQALNFKKEKGHFHDNSAAESNVSEASTESKQTSVNSTDTEIKQVKGSLPEGFFDNKEADLRARGIKLVKPDVKYRDSFSYMASLKRGCTLESIVQPLIEVQKTSHSALYGCTPHSRGNFCSSLFCGICISLNGLELKMTLNSLKSSLRDEYKEFEKLIQEDLQEVDNRLEEEEIDAAEMIEEAESVEQKIFREKVEMLKKRRLDLKAANAAKRNKSSEVVAKESTHEDSSSDDESEENFAPISDFGHYGQIWAEYGLYGQIWADEAYDQELKFLVPFTDGSELRDLLDSPSKVEILRSKANPCQFFLEIVKHFENYITFAYLIKGTAFGQAL 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02564 562 Coils Coil 370 419 - -
Vimu8g02564 562 MobiDBLite consensus disorder prediction 446 469 - -
Vimu8g02564 562 Coils Coil 135 155 - -
Vimu8g02564 562 SUPERFAMILY beta-beta-alpha zinc fingers 107 148 IPR036236 -
Vimu8g02564 562 MobiDBLite consensus disorder prediction 206 220 - -
Vimu8g02564 562 PANTHER UNCHARACTERIZED 28 470 IPR040050 GO:0003676|GO:0005681|GO:0008270
Vimu8g02564 562 MobiDBLite consensus disorder prediction 246 269 - -
Vimu8g02564 562 MobiDBLite consensus disorder prediction 240 269 - -
Vimu8g02564 562 MobiDBLite consensus disorder prediction 178 200 - -
Vimu8g02564 562 Gene3D Classic Zinc Finger 105 147 - -
Vimu8g02564 562 MobiDBLite consensus disorder prediction 149 223 - -
Vimu8g02564 562 Pfam Zinc-finger of C2H2 type 116 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02564 Vimu-Chr8 34753118 34768117 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02564 28 448 C2H2 Transcription Factor Family AT3G02860 35.461 2.24e-58 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02564 K13104 - gmx:100808515 351.673