Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02560 ATGGACCCGAAGTTCACCGGAAAGCCGCCGCTGACGGTGGACCTTGAACGCATGCCGGAGCGTGGGTCCCACCACCGCCGCTCCCACTCCGACACGTCGTTCCGCTTCGCCGCGAACTTCGACGACCTGCTCCTCTTCGACGCCTCCGACCTCGACATCTCCACGCTCCCCTCGCCGCTCCCCCTGCCTTCGCCGGGGGCCTCCGGGGCGGTGCCGATAGCGGTAGATTCCGACGAGTCCGGCGGAAGGCCGAGGCCGGCAGGGGCACCCGCCGGCGGGCACCTGAGGAGTCTGTCGGTGGGCTCCGATTTCTTTGACGGGATCGGGTTCGGCGGCGGCGAGGAGAGGGGCGGCGGAGGGAGGGTCGGCGGCGAACGGAGGGTGGGGCACCATCGGCACAGCAACTCCATGGATGGGTCCTCGACGACGTCGTTTGAGGCGGACTCGGCGATGATGATAGATGGCGTGAAGAAAGCTATGGCTCCTGATAAACTAGCTGAACTCGCTCTTATTGATCCCAAAAGAGCTAAGAGGATTCTTGCTAACAGGCAATCTGCTGCTAGATCAAAGGAGAGGAAGATTCGTTACACCAGTGAATTGGAGAGGAAGGTGCAGACACTTCAGACTGAAGCAACCAACCTATCTGCACAGCTTACCATGCTTCAGAGAGACACCACAGATTTAACTGCAGAGAATAAGGAACTCAAACTGCGTCTAGAGGCTTTAGAGCAAGAAGCACAGCTTAGAGAAGACCTGAATGAGGCATTGAAAGAAGAACTGCAGCGCCTTAGGGCACAGAGTACTCGTTTGGGTGCTATTGCAGGTAACCCTTCTTTTGGTGGGATATTCAACCAGTTGGCTTCCCAGTTAGCGATGCAACAGTTGAGTAATTCTGCACCACAGCAACCACAACACCAGGCACAGGTTGGCATGCCTCCTCCTCCCTCTGGACAGAACCACCCTAACTACATGGATTTCAATCAGCAGAAGTAG 993 0.574 MDPKFTGKPPLTVDLERMPERGSHHRRSHSDTSFRFAANFDDLLLFDASDLDISTLPSPLPLPSPGASGAVPIAVDSDESGGRPRPAGAPAGGHLRSLSVGSDFFDGIGFGGGEERGGGGRVGGERRVGHHRHSNSMDGSSTTSFEADSAMMIDGVKKAMAPDKLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATNLSAQLTMLQRDTTDLTAENKELKLRLEALEQEAQLREDLNEALKEELQRLRAQSTRLGAIAGNPSFGGIFNQLASQLAMQQLSNSAPQQPQHQAQVGMPPPPSGQNHPNYMDFNQQK 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02560 330 Gene3D - 173 245 - -
Vimu8g02560 330 Pfam bZIP transcription factor 174 232 IPR004827 GO:0003700|GO:0006355
Vimu8g02560 330 Coils Coil 197 273 - -
Vimu8g02560 330 MobiDBLite consensus disorder prediction 1 32 - -
Vimu8g02560 330 FunFam Transcription factor VIP1 173 226 - -
Vimu8g02560 330 MobiDBLite consensus disorder prediction 119 134 - -
Vimu8g02560 330 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 172 235 IPR004827 GO:0003700|GO:0006355
Vimu8g02560 330 MobiDBLite consensus disorder prediction 14 32 - -
Vimu8g02560 330 SUPERFAMILY Leucine zipper domain 174 226 IPR046347 GO:0003700|GO:0006355
Vimu8g02560 330 CDD bZIP_plant_RF2 175 224 IPR044759 GO:0003700|GO:0006355
Vimu8g02560 330 MobiDBLite consensus disorder prediction 293 330 - -
Vimu8g02560 330 MobiDBLite consensus disorder prediction 64 95 - -
Vimu8g02560 330 MobiDBLite consensus disorder prediction 109 143 - -
Vimu8g02560 330 SMART brlzneu 170 234 IPR004827 GO:0003700|GO:0006355
Vimu8g02560 330 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 12 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02560 Vimu-Chr8 34696539 34700399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02560 14 329 bZIP Transcription Factor Family AT1G43700 48.830 7.73e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu8g02560 bZIP_1 7.5e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02560 K20557 - gmx:778142 458.759