Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02535 ATGGCTAAGATAAGGGAGAAGTTATACGTCACCGTTCCGAGTCTCTTTCGGTGCCCAATTTCAATGGATGTCATGCAGTCCCCTGTAAGCCTCTGCACCGGCGTCACATACGATCGCGCAAGCATTCAGCGCTGGCTTGACTCAGGACACGACACGTGTCCCGCCACCATGCAGGTTCTTCCCTCCAAAGACTTCATCCCCAATCTCACGCTTCACCGCCTCATCCGCCTGTGGCTCCTCTCCGCCGAACCTCCCTCGCCGGATTCCTCTGCCGACAAACTGCACTCCCTCCTCCGCCAAATCCAAACCGCTGACGATGACCTCGCCGGAACCCTCTCCAAAATCGCCGAATTCGCCACAACCTCCGGCGAAAATCGTCGGAAACTTGCCTACTTCCCCGGCTTCGACGCCGCTATCGTACGCGCGCTGGCCAGGTGCAGTTCGCGGATAGATGCGTCGGAAAACGCTATTTACCTTCTCGACTCGGTCCTCCGAGAAAACGGAAATCCAGAGAAGATGCGAAGGCTAATTTTCGACGCTCGCCAACAATGCTTTGATTCGATGATTTTCATTTTACGAAACGGATCTTCGAAATCGAAGATTGAAACGGTTAGGTTTTTGGAGTTTCTTGCGTGCGACTTTCAGTCCTCAAAATCGATCGCGGAAACGCAAGGACTGTTGTCTTTGGTAGCGGGTTTTTTGAAGGACGGTGGAGAGGAGTTACGCGAGGCCGTTTTGTTGTTTCTAGGCGTCCTTTCGGTGACTCGCTCCGCGAAGGTGGAACTAGTTAATTGCGGTGTTGTCGAATTGGTTTCGAAATTGTTACGAGATTGTTCGTCGTCAAAGACGGCGGAGAGGTGTCTGAGGGTGCTGGCGGTGGTGGCGACGTGCGCGGAGGGGAGGGAGGCGATGGCAGCGGAGCCTTCGTGTGCAGCGGCGGTGGTGGAGAGAGTGACGAAGGCGGTGAAGGTGGCGGCGGAGGACGCAGTGGTGGTGCTGTGGAGCTTGTGCTGTTTGAGCGGTAATGTGAAGGTGAGGGATGACGTGGCAAAACGAAACGGCGTGGCAGTGATTTTATTGGTTATGCAGAGAGGGTGGGAGGAGCACGTGAGGAGCATGTGTGTGGATTTGATTAAGGTTTTGAAGGATGCGTGCAAGAACAACGGGTTGGGGTTGGAACTCGGAACCTATGACACCAAAACCACTCATATCAAACCTTGCTAA 1224 0.5417 MAKIREKLYVTVPSLFRCPISMDVMQSPVSLCTGVTYDRASIQRWLDSGHDTCPATMQVLPSKDFIPNLTLHRLIRLWLLSAEPPSPDSSADKLHSLLRQIQTADDDLAGTLSKIAEFATTSGENRRKLAYFPGFDAAIVRALARCSSRIDASENAIYLLDSVLRENGNPEKMRRLIFDARQQCFDSMIFILRNGSSKSKIETVRFLEFLACDFQSSKSIAETQGLLSLVAGFLKDGGEELREAVLLFLGVLSVTRSAKVELVNCGVVELVSKLLRDCSSSKTAERCLRVLAVVATCAEGREAMAAEPSCAAAVVERVTKAVKVAAEDAVVVLWSLCCLSGNVKVRDDVAKRNGVAVILLVMQRGWEEHVRSMCVDLIKVLKDACKNNGLGLELGTYDTKTTHIKPC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02535 407 Gene3D - 79 392 IPR011989 -
Vimu8g02535 407 SUPERFAMILY ARM repeat 180 386 IPR016024 -
Vimu8g02535 407 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Vimu8g02535 407 FunFam RING-type E3 ubiquitin transferase 4 83 - -
Vimu8g02535 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 78 IPR013083 -
Vimu8g02535 407 SUPERFAMILY RING/U-box 8 81 - -
Vimu8g02535 407 CDD RING-Ubox_PUB 13 65 IPR045210 -
Vimu8g02535 407 PANTHER WDSAM1 PROTEIN 9 387 IPR045185 GO:0061630
Vimu8g02535 407 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Vimu8g02535 407 Pfam U-box domain 12 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02535 Vimu-Chr8 34330049 34338274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02535 6 406 U-box Gene Family AT5G09800 38.072 1.14e-77 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02535 - - gmx:100786235 609.757