Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02532 ATGGCTATCTCTGTTGCTGGCAAAGCTGTTTTCCAACGCTACTTGCGTCCTGAGAAGGACTATTTGTCCTTTTCACTTATTTATGGTAGCGGAAAGCGGTCACTTGATTTGATTTGTAAAGATAAAGCTGAGGCAGAAGTGTGGATTGCTGGCCTCAAAGGACTGATATCTTCTGGTCAAGGTGGCCGATCTAAAATTGATGGATGGAGTGACGGGGGTCTCATTCTTGATGCAGCATTTGGGAAATGTGCTAGAATGGAATGGAACGACATAGGGGGTGTTGATAACAGAGACTTAAAATCAAAAAGTCCAAGTGAAAGTTCTGCTAGCACTTCACGAGGCATCAGTTCTCCTGACATTTCTGTGAGTCTTCCAAATACTTCACCGAAGTCTTTTCAACCTGACAATATAATCTCTGAAAGGTCACATGCACCACCAGACCCAACAAACATGCAAGTGAAAGGATCTGGTTCAGATGCTTTTCGTGTCAGTGTTTCGAGTGCCCCTAGTACTTCAAGTCATGGATCTGCACCAGATGACTATGATGCTCTGGGGGATGTATACATATGGGGCGAGGTTATCTGTGATCATGTTAAAATTGGTGCTGATAAAAATGTCAATTATTTCAGCCCAAGGGCAGATGTACTTCTCCCTAGACCACTGGAAGCCAATGTAGTTTTAGATGTGCATCATATAGCATGTGGTGTTAGACATGCTTCTCTAGTCACTAGGCAAGGTGAAGTTTTTACATGGGGCGAAGAATCAGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATCTGGTTCAACCTCGTCTAGTTGAAGCGTTGACTTCTACAACTATTGATTTTGTTGCCTGTGGAGAGTTCCATTCATGTGCTGTTACAATGGCCGGGGAACTATACACATGGGGTGATGGTACTCATAATGCAGGGCTTCTTGGTCATGGAAGTGATGTCAGCCATTGGATACCAAAGCGAATTGCCAATTCATTAGAGGGACTTCAAATTGCATTTGTTGCTTGTGGTCCTTGGCACACAGCGTTGATAACTTCAACAGGGCAGCTGTTTACATTTGGGGATGGAACATTTGGTGTCCTGGGCCATGGAAATAAGGAAAATGTTTCATATCCTAAAGAAGTGGAATCCTTGTCTGGACTGAGGACAATAGCTGTAGCATGTGGGGTGTGGCATACTGCAGCTGTTGTAGAAGTTATGGCAACACACTCCAGTACAAGTGTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGGGACAAGGAGGCACGTCTTAAACCAACCTGTGTGCCTGCGCTTATTGATTACAATTTTCATAAAATTGCTTGTGGACACAGTTTGACAGCAGGCCTGACGACATCTGGACGTGTTTTTACTATGGGAAGTACTGTTTATGGTCAACTTGGGAATCCCCAGTCTGATGGGAAGCTTCCATGCTTGGTTGGAGACAAGATTGCTGGGGAATGTGTTGAAGAAATTGCATGTGGTGCGTATCATGTTGCTGTATTAACATCCAAAAATGAAGTTTATACTTGGGGGAAAGGTGCAAATGGGAGATTGGGTCACGGAGATATCGAAGATCGAAAAACACCAGCTTTGATTGAAGCATTGAAGGATAGACATGTGAAATATATAGCTTGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTATCTGGTGCGGAGCAGTCTCAGTGCTCTACTTGTAGACAGGCATTTGGCTTTACAAGAAAGAGGCATAATTGTTATAACTGTGGATTGGTCCACTGCCATTCGTGCAGTTCAAGGAAAGCATTAAGAGCAGCATTGGCTCCTAATCCCGGCAAGCCATATCGTGTGTGTGATTCTTGTTATGTAAAATTGATCAAGGTTGCTGAAGCTAGCAATAGTAATAGAAGGAATGCCTTGCCTCGTTTGTCAGGTGAAAACAAGGATAGGCTAGACAAATCTGACCTGAGATTATCCAAGGCAATAATTCCTTCTAATGTGGATTTGATAAAGCAACTAGATAATAAGGCGGCCAAGCAAGGAAAGAAAAGTGATACATTCTCTCTGGTACGCACATCACAACCACCTTCTTTGCTACAGCTGAAAGATGTTGTCATGTCCACTGCTCTTGATCTGAGACGAACAGTTCCAAGACCGGTGGTTGCACCATCAGGAGTAAGTTCCAGATCTGTGTCACCTTTTTCTAGAAGACCAAGCCCCCCTCGCTCAGCTACTCCAATTCCAACAACTTCAGGACTTTCCTTCTCGAAAAGTATTTCTGATAGTTTGAAGAAGACAAATGAACTTTTAAATCAAGAAGTGCAGAAGTTACATGCTCAGAGCTTTCCTTCTTTGACACTGTCCAGTTATCCTGCTGATTTTGAGCCTGGCAAAACACAGTCACTGTCACTTTGCTTAAATTGCCAGAAAGTTAATGTCACACAGAGATGTGAACTGCAAGAATTAGAGCTTCAAAGGTCAGCAAAAAAGACCGAAGAAGCTATGTTATTGGCTGCTGAGGAATCTGCAAAATGTAAAGCTGCAAAAGAAGTTATAAAGTCACTCACAGCACAGCTCAAAGATCTAGCTGAGAAGCTTCCTCCTGGAGTTTATGATACTGAGAACATAAGACCAGCTTACCTACCAAATGGTCTTGAGCCAAATGGCATCCACTATCCAGATTCAAATGGGGAGCAGCAGCACTCCAGAGCAGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATGGGACTTGAATCCTCTCTACTGAATAGAACTGTGCGGAATTCACCAGGAACCAATGGAACTAATCTTCACCAGCAAATCCGGAGCCCTGTGATCTCTAATGGGACCAATAGTTATCCAGATGTTAAATTGCCAAATGGTGGTGGCGTAATTCAAGCAGGCAGCGGTAGCACAGCTGATGATGGTAGGGATTCTGGGAATTTTCACAATGACGAGAGTGGTCTGAAATCAAGGAATGCTGTACCTGCTGCTAATACTAATCAAATTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTACATAACACTTGTGGCACTGCGTGATGGAACGAGAGATCTGAAGCGAGTACGTTTCAGCCGAAGGAGATTTGGAGAGCACCAAGCAGAAACCTGGTGGTCGGAGAACCGGGACAAGGTATATGAAAGATACAATGTTCGCAGTGCAGACAAACCTGCCGGCCAGGCGGCACGAAGTTCGGAAGGGGCTGGTTCACCTGTTTCCCAAACTTAG 3294 0.442 MAISVAGKAVFQRYLRPEKDYLSFSLIYGSGKRSLDLICKDKAEAEVWIAGLKGLISSGQGGRSKIDGWSDGGLILDAAFGKCARMEWNDIGGVDNRDLKSKSPSESSASTSRGISSPDISVSLPNTSPKSFQPDNIISERSHAPPDPTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICDHVKIGADKNVNYFSPRADVLLPRPLEANVVLDVHHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNLVQPRLVEALTSTTIDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGSDVSHWIPKRIANSLEGLQIAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGNKENVSYPKEVESLSGLRTIAVACGVWHTAAVVEVMATHSSTSVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPALIDYNFHKIACGHSLTAGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKIAGECVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKTPALIEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYVKLIKVAEASNSNRRNALPRLSGENKDRLDKSDLRLSKAIIPSNVDLIKQLDNKAAKQGKKSDTFSLVRTSQPPSLLQLKDVVMSTALDLRRTVPRPVVAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSISDSLKKTNELLNQEVQKLHAQSFPSLTLSSYPADFEPGKTQSLSLCLNCQKVNVTQRCELQELELQRSAKKTEEAMLLAAEESAKCKAAKEVIKSLTAQLKDLAEKLPPGVYDTENIRPAYLPNGLEPNGIHYPDSNGEQQHSRAESISGSSLASMGLESSLLNRTVRNSPGTNGTNLHQQIRSPVISNGTNSYPDVKLPNGGGVIQAGSGSTADDGRDSGNFHNDESGLKSRNAVPAANTNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVRSADKPAGQAARSSEGAGSPVSQT 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02532 1097 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 416 467 IPR000408 -
Vimu8g02532 1097 FunFam PH, RCC1 and FYVE domains-containing protein 1 406 577 - -
Vimu8g02532 1097 SUPERFAMILY FYVE/PHD zinc finger 572 647 IPR011011 -
Vimu8g02532 1097 MobiDBLite consensus disorder prediction 1074 1097 - -
Vimu8g02532 1097 Pfam Regulator of chromosome condensation (RCC1) repeat 415 462 IPR000408 -
Vimu8g02532 1097 Pfam Regulator of chromosome condensation (RCC1) repeat 246 294 IPR000408 -
Vimu8g02532 1097 Pfam Regulator of chromosome condensation (RCC1) repeat 353 401 IPR000408 -
Vimu8g02532 1097 Pfam Regulator of chromosome condensation (RCC1) repeat 298 349 IPR000408 -
Vimu8g02532 1097 Pfam Regulator of chromosome condensation (RCC1) repeat 467 516 IPR000408 -
Vimu8g02532 1097 Pfam Regulator of chromosome condensation (RCC1) repeat 521 568 IPR000408 -
Vimu8g02532 1097 Coils Coil 772 792 - -
Vimu8g02532 1097 CDD FYVE_like_SF 581 634 - -
Vimu8g02532 1097 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 352 IPR000408 -
Vimu8g02532 1097 ProSiteProfiles BRX domain profile. 1017 1072 IPR013591 -
Vimu8g02532 1097 ProSiteProfiles PH domain profile. 1 57 IPR001849 -
Vimu8g02532 1097 SUPERFAMILY RCC1/BLIP-II 184 573 IPR009091 -
Vimu8g02532 1097 MobiDBLite consensus disorder prediction 732 766 - -
Vimu8g02532 1097 Coils Coil 850 877 - -
Vimu8g02532 1097 MobiDBLite consensus disorder prediction 936 967 - -
Vimu8g02532 1097 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 353 404 IPR000408 -
Vimu8g02532 1097 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 185 245 IPR000408 -
Vimu8g02532 1097 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Vimu8g02532 1097 FunFam Putative E3 ubiquitin-protein ligase HERC1 578 646 - -
Vimu8g02532 1097 MobiDBLite consensus disorder prediction 94 156 - -
Vimu8g02532 1097 MobiDBLite consensus disorder prediction 936 1007 - -
Vimu8g02532 1097 SMART fyve_4 570 639 IPR000306 GO:0046872
Vimu8g02532 1097 Gene3D - 139 402 IPR009091 -
Vimu8g02532 1097 Gene3D - 403 576 IPR009091 -
Vimu8g02532 1097 PRINTS Chromosome condensation regulator RCC1 signature 515 536 IPR000408 -
Vimu8g02532 1097 PRINTS Chromosome condensation regulator RCC1 signature 355 369 IPR000408 -
Vimu8g02532 1097 PRINTS Chromosome condensation regulator RCC1 signature 339 355 IPR000408 -
Vimu8g02532 1097 PRINTS Chromosome condensation regulator RCC1 signature 248 264 IPR000408 -
Vimu8g02532 1097 PRINTS Chromosome condensation regulator RCC1 signature 298 314 IPR000408 -
Vimu8g02532 1097 PRINTS Chromosome condensation regulator RCC1 signature 457 475 IPR000408 -
Vimu8g02532 1097 SUPERFAMILY PH domain-like 9 56 - -
Vimu8g02532 1097 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 468 519 IPR000408 -
Vimu8g02532 1097 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 577 638 IPR013083 -
Vimu8g02532 1097 Pfam Transcription factor BRX N-terminal domain 852 887 IPR027988 -
Vimu8g02532 1097 Pfam Transcription factor regulating root and shoot growth via Pin3 1016 1071 IPR013591 -
Vimu8g02532 1097 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 246 297 IPR000408 -
Vimu8g02532 1097 FunFam PH, RCC1 and FYVE domains-containing protein 1 156 405 - -
Vimu8g02532 1097 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 339 349 IPR000408 -
Vimu8g02532 1097 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 520 571 IPR000408 -
Vimu8g02532 1097 MobiDBLite consensus disorder prediction 905 922 - -
Vimu8g02532 1097 MobiDBLite consensus disorder prediction 103 156 - -
Vimu8g02532 1097 Gene3D - 6 62 IPR011993 -
Vimu8g02532 1097 Pfam FYVE zinc finger 572 637 IPR000306 GO:0046872
Vimu8g02532 1097 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 576 638 IPR017455 -
Vimu8g02532 1097 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 19 872 - -
Vimu8g02532 1097 MobiDBLite consensus disorder prediction 894 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02532 Vimu-Chr8 34264152 34269065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02532 1018 1088 Major Intrinsic Protein MIP AT1G31880 51.389 5.33e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02532 - - gmx:100805364 1812.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02532 8 34264152 34269065 Vimu3g02958 3 43662395 43669352 PCT