Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02482 ATGAAACATTGTCTCAAAAAAGGTTTGAAGCCTCATGAAGGTGAAAGTTTAAATCATGATAATATAGTGTTGATAGATTTCATGAAGACGTCAAAGAATGGTGATGGAACTCAAGAATCATCGAAGAATAAGACAATCGATTCATCTATTTCTTACATAAAAGATGAAGATAAGAAGAATGCAAATGCGAAAGAAGGAAAGATTTTTTGTTGCAATTATTGTAAGAAAGAGTTTTCTAGCTCGCAAGCTTTGGGAGGACACCAAAACGCACACAAACAAGAACGGAGTATGGCAAAACGTGTTGAAGGTTTTGATCCTTATTACTCTTATTATTCAAATTTATATAACTCTCATCATTCCCTTTATGGAGGGTCCTTTAATAGGGTACTTGGGGTTAGAAAGGAATCCATGATTCAAAAGTTTCCTTGGACTTCAATACATGAATATTCATTGTTTAAAAGGGATCATAAGACGTCTATATTTGATGGGTTCGGAATTATGAAGAGTGATAACAATTATAAGACCACTCTTCAAACACTCACTCTTTTTACAAGTGATCCTAACACTTCATCAAGCCAACTTCGAAAGACGACAATGGTTGCAACAACAGATATTGTTGATCACTCTATTGCTGAACAAGCTTCCAATGAAAAATCTTGCAATCTTGATTTGTCACTCAATCTTTATACATAG 693 0.3405 MKHCLKKGLKPHEGESLNHDNIVLIDFMKTSKNGDGTQESSKNKTIDSSISYIKDEDKKNANAKEGKIFCCNYCKKEFSSSQALGGHQNAHKQERSMAKRVEGFDPYYSYYSNLYNSHHSLYGGSFNRVLGVRKESMIQKFPWTSIHEYSLFKRDHKTSIFDGFGIMKSDNNYKTTLQTLTLFTSDPNTSSSQLRKTTMVATTDIVDHSIAEQASNEKSCNLDLSLNLYT 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02482 230 ProSitePatterns Zinc finger C2H2 type domain signature. 70 91 IPR013087 -
Vimu8g02482 230 Gene3D Classic Zinc Finger 40 105 - -
Vimu8g02482 230 SUPERFAMILY beta-beta-alpha zinc fingers 66 97 IPR036236 -
Vimu8g02482 230 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Vimu8g02482 230 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 20 228 IPR044246 GO:0009788
Vimu8g02482 230 Pfam C2H2-type zinc finger 69 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02482 Vimu-Chr8 33271195 33271887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02482 37 152 C2H2 Transcription Factor Family AT5G01860 41.176 1.03e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu8g02482 zf-C2H2_6 6.8e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02482 - - var:108320958 327.405