Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02463 AAAACATTAGGACAATGTTTTGTTAATAAAGGTGTAACTTTCTTCTCCTTCATATCAGAGTTTGAGCGGCAAAGAAAACTTACAGTGATGGATGATTTTTGGAGCATGGCTTGTGGAGAAACTGATTGTCTTGGGAATGGAGGAAAACCACCCTTCTGTTACGATTTCAAGTTTTTGAAAGATCCTTCTTCGTGCACCATTCAATTGTTGGTCATCTGCTTTGATGTTTTGCTGCTGATCATGCTAGCATTCATTTTGATACAGAAGTCTTTGTTCAAACCACTTCGTGGTCAGTTTCAGGTGGAAAGATATTCAAACTTGCAGCTAGTTTCAGCCATAACCAATGGTTTTCTGGGGTTGTTGTATCTGTGCTTAGGCATTTGGGTTTTAGAGGAGGAATTAAGAAAGGGACACACTCTCTTCCCTCTTAAGTTGTGGTTGGCAGAGCTTTTTCAAGGATTCAGATGGCTTTTTGTAGGCCTAAGTGTAAGTCTTCAGTTGAAACAACTTCCAAGACCATGGTTGTGGTTGTTTTCTCTTGTTGCGTTTTTTGTTTCATTTATCTTCTGTGTTCTATCCATGTCTTACGCAATTAGTAGCAGAAAATTGACCTTCAAGGAAGCTTTCGATTTTCTGTCTTTTCCAGGATCAGTTTTGCTTCTCTTGTGTACTTATAAAGTACATAAACGTGACGGAGAAATTGATGAAGGCCTTTACGACCCTTTGAATGATCACTGTAGTGAGGTTGATCCAGATAATTATGTGACTCCATTTGCCAAAGCTGGATTCCTTAGTAAGATGTCATTTTGGTGGTTGAATCCATTGATGAAAAGGGGTCAAGAGAAAACACTTCAGGATGAGGATATACCCAAGTTGCGAGAATCAGATCGAACAGAAAGTTGCTACTTGTCCTTTTTAGAACTTTTGAACAGAGAAAAAGGAAAAGAACCATTATCACAATCATCTTTGCTGTGGACCATAGTTTGGTGCCACAGGAGAGAGATTTTGATGACAGGATTCTTTGCTCTGCTCAAAGTATTCACCTTGTCCACTGGTCCTGTACTTCTGAATGCTTTTATATTAGTTTCTGAGGGTAATGGAAGTTTCAAATATGAGGGTTATGTATTGGTCATAGTACTTTTCATCATAAAGATCATCGAGTCCTTGTCTCAAAGACAGTGGTATTTCCGCAGTAGGCTTGTCGGAATGAAAGTTAGATCACTGCTTACTGCAGCCATTTATAAAAAATTATTGAGGTTATCTAGTGCAGCTAGATTGACACACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTACAGAATTGGAGAATTTCCATATTGGTTTCACCAGTCATGGACAACAAGCCTCCAAATATGTATTGCTATAGTTATACTTTTTGATGCTATTGGAATAGCCACAATATCCTCATTGGTGGTGATAGTCCTCACTGTGCTTTGCAACGCTCCACTAGGAAAGTTGCAGCATAAGCTTCAGAGCCAACTCATGGAGGCACAAGATGAGCGATTGAAGGCGAGTTCTGAGGCTCTTACAAATATGAAAGTGCTGAAGCTGTATGCATGGGAAACTCATTTCAGAAAGGCTATAGAAAGACTTAGGAATTTGGAACTGAAACTTTTACGTTCAGTGCAACTGAAAAAGGCGTACAACATCTTTCTTTTTTGGTCCTCACCGATTTTGGTCTCTGCTGCTTCTTTTGGGACATGTTACTTCTTGAATATTCCTCTGCATGCAAATAATCTTTTCACATTTGTGGCCACCATACGCCTTGTGCAGGAGCCAATTACAGCCATCCCAGATGTTATTGGGGTGGTCATTCAAGCAAAAGTGGCATTTTACCGGATTATTCAGTTCCTTAATGCACCTGAATTGCAAAGTGTAAATTTCAGGAATAAAAGTTTTGATGGCAGTAAAGGGTCAATTACAATCAAATCTGCTGACTTTTCATGGGAAGGTAATGATTCAAAGTCAACACTGAGGAACATAAACTTGGAGATCAGACATGGGCAAAAGATTGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACCCTCTTGGCTACAATTCTTGGAGAGGTTCCAAGGATAAAAGGAACTATTGAAGTTTATGGAAAGTTTGCATATGTTTCTCAAACAGCATGGATACAGACTGGTACTATACGGGAAAATATTTTGTTTGGATCAGATTTGGATGCTCATAGATATCAAGAAACACTTCGTAGATCATCACTACTAAAGGATTTGGAGCTGTTTCCCCATGGAGACCTCACACAAATAGGTGAGAGAGGAGTTAACTTGAGTGGAGGCCAGAAGCAGCGAATTCAACTTGCGCGTGCTCTTTATCAGAATGCTGATGTATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCACAGACTGCCACAAATTTGTTTAATGAATACATCATGGATGGTCTTAAAGAGAAAACTGTTTTACTCGTTACTCATCAAGTCGACTTTCTACCAGCGTTTGATTCTGTTTTGTTGATGTCAAATGGGGAAATCCTAGAATCTGCTCCTTATCATCATTTGTTGTCCACAAGCCAAGAATTCCAAGATCTTGTTAATGCTCACAAGAAAACTGCTGGTTCTAACAATCCTATGAATGTTTCTTCTTCCAAGAGGCCTTCAATATCTGCTAAAGAGATTACACAAGCTTTCAAGGAGAACGAATCAAAAGACACATATGGAAATCAGTTAATAAAGGAAGAAGAGAGAGAGATAGGAGACACGGGGTTGAAGCCTTACTTGCAGTATTTGAATCACACAAAAGGCTATGTATACTTCTTTGTGACTTCTCTTTGTCACCTCTTGTTTGTCATTTGCCAGATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATAACAAAGTTAGCACATTGCGGCTGATTGTTGTTTACTTCATGATTGGGGTTCTTTCTACTGTTTTTTTGCTGATCAGAACTGTACTTCTAGTTTCCTTGGGCATTCAATCATCAAAATATATATTTTTACAGTTAATGAACTCCCTTTTCCGTGCACCGATGTCCTTCTATGATTCTACACCATTGGGAAGAATACTTAGTAGGGTCTCATCAGATCTAAGCATTATGGATATTGATATCCCTTTTATTATTGCTTATACTGTGGGAGGTACTACAAACTTCTATACCAACCTCATAGTTTTAGCAATTATCACTTGGCAAATCTTGTTTATCGCTGTACCGATGGTTTACATTGCAATACGCTTGCAGAAATACTATTTTTCCACTGCAAAAGAAGTGATGCGTATGAATGGCACAACAAAGTCCTTTGTAGCTAATCATCTAGCTGAAACTAATGCTGGAGTTGTGACAATAAGAGCCTTTGAAGAAGACGATCGTTTCTTTGAGAAGAGTCTTGATCTAATTGACATCAATGCTAGTCCCTTCTTCCATAGTTTTGCCGCAAATGAGTGGCTGATCCAGAGATTAGAAATAGTCAGTGCAGTGCTTCTTTCCTCCACAGCACTATGCATGGTTACACTTCCACCAGGGACTTTCAGCTCTGGATTCATTGGCATGGCTCTATCTTATGGCCTTACACTAAATGCTCAACTAGTATTTTCAATTCAGAGTCAATGCAATCTAGCAAATTACATAATTTCTGTGGAGAGGCTAAATCAGTATATGCATATAGCAAGTGAGGCCCCAGAAGTAATAGAAGGAAATCTTCCTCCTTCAAATTGGCCAGTTGCTGGTAAAGTAGAACTAAAAGACTTGCAGGTACGATACAGGCCTGATGGACCACTTATACTTCATGGAATCACATGCACATTCAAAGCAGGACACAAGATTGGAATCGTTGGAAGAACAGGCAGTGGAAAGTCCACTCTTATCAGTGCATTATTTCGTCTGGTGGAGCCAGCAGGTGGAAAAATTGTAGTTGATGGCATAGATATATCTTCAATTGGCCTTCATGATTTGAGGTCACGTTTTGGAGTTATACCTCAGGATCCTACCCTTTTTCATGGAACTGTTAGATATAATTTAGACCCTTTATCTCAATACTCTGATCAGGAGATATGGGAGGTTCTTGGGAAATGTCAGTTACGAGAAGTTGTCCAAGAGAAATTTGAGGGTCTAAACTCCCCAGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAGAGGCAATTATTTTGTTTGGGGCGTGCACTTTTAAGGAGAAGTAGGATATTGGTGTTGGATGAAGCTACTGCATCAATTGACAATGCAACTGATTTGATTCTACAGAAAACAATCAGGACTGAGTTTGCAGATTGCACAGTGATTACAGTAGCACACAGGATACCAACTGTGATGGATTGCACTATGGTTCTTTCAATCAGTGATGGAAAGTTGGTGGAGTATGATGAACCAACGAAGTTGATGGCGAAAGAAGGATCGCTGTTCAAGCAACTTGTGAAGGAGTACTGGTCTCATTTCCAATCTGCAGAATCACATTGA 4518 0.3953 KTLGQCFVNKGVTFFSFISEFERQRKLTVMDDFWSMACGETDCLGNGGKPPFCYDFKFLKDPSSCTIQLLVICFDVLLLIMLAFILIQKSLFKPLRGQFQVERYSNLQLVSAITNGFLGLLYLCLGIWVLEEELRKGHTLFPLKLWLAELFQGFRWLFVGLSVSLQLKQLPRPWLWLFSLVAFFVSFIFCVLSMSYAISSRKLTFKEAFDFLSFPGSVLLLLCTYKVHKRDGEIDEGLYDPLNDHCSEVDPDNYVTPFAKAGFLSKMSFWWLNPLMKRGQEKTLQDEDIPKLRESDRTESCYLSFLELLNREKGKEPLSQSSLLWTIVWCHRREILMTGFFALLKVFTLSTGPVLLNAFILVSEGNGSFKYEGYVLVIVLFIIKIIESLSQRQWYFRSRLVGMKVRSLLTAAIYKKLLRLSSAARLTHSGGEIMNYVTVDAYRIGEFPYWFHQSWTTSLQICIAIVILFDAIGIATISSLVVIVLTVLCNAPLGKLQHKLQSQLMEAQDERLKASSEALTNMKVLKLYAWETHFRKAIERLRNLELKLLRSVQLKKAYNIFLFWSSPILVSAASFGTCYFLNIPLHANNLFTFVATIRLVQEPITAIPDVIGVVIQAKVAFYRIIQFLNAPELQSVNFRNKSFDGSKGSITIKSADFSWEGNDSKSTLRNINLEIRHGQKIAICGEVGSGKSTLLATILGEVPRIKGTIEVYGKFAYVSQTAWIQTGTIRENILFGSDLDAHRYQETLRRSSLLKDLELFPHGDLTQIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAQTATNLFNEYIMDGLKEKTVLLVTHQVDFLPAFDSVLLMSNGEILESAPYHHLLSTSQEFQDLVNAHKKTAGSNNPMNVSSSKRPSISAKEITQAFKENESKDTYGNQLIKEEEREIGDTGLKPYLQYLNHTKGYVYFFVTSLCHLLFVICQILQNSWMAANVDNNKVSTLRLIVVYFMIGVLSTVFLLIRTVLLVSLGIQSSKYIFLQLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIMDIDIPFIIAYTVGGTTNFYTNLIVLAIITWQILFIAVPMVYIAIRLQKYYFSTAKEVMRMNGTTKSFVANHLAETNAGVVTIRAFEEDDRFFEKSLDLIDINASPFFHSFAANEWLIQRLEIVSAVLLSSTALCMVTLPPGTFSSGFIGMALSYGLTLNAQLVFSIQSQCNLANYIISVERLNQYMHIASEAPEVIEGNLPPSNWPVAGKVELKDLQVRYRPDGPLILHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFHGTVRYNLDPLSQYSDQEIWEVLGKCQLREVVQEKFEGLNSPVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKLVEYDEPTKLMAKEGSLFKQLVKEYWSHFQSAESH 1505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02463 1505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1252 1491 IPR027417 -
Vimu8g02463 1505 SMART AAA_5 1285 1477 IPR003593 GO:0016887
Vimu8g02463 1505 SMART AAA_5 677 850 IPR003593 GO:0016887
Vimu8g02463 1505 Gene3D - 626 894 IPR027417 -
Vimu8g02463 1505 CDD ABCC_MRP_domain1 650 850 - -
Vimu8g02463 1505 CDD ABCC_MRP_domain2 1257 1477 - -
Vimu8g02463 1505 ProSitePatterns ABC transporters family signature. 775 789 IPR017871 GO:0005524|GO:0016887
Vimu8g02463 1505 Gene3D ABC transporter type 1, transmembrane domain 907 1240 IPR036640 GO:0005524|GO:0016020
Vimu8g02463 1505 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 336 616 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g02463 1505 FunFam ABC transporter C family member 3 1242 1494 - -
Vimu8g02463 1505 SUPERFAMILY ABC transporter transmembrane region 941 1242 IPR036640 GO:0005524|GO:0016020
Vimu8g02463 1505 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 652 873 IPR003439 GO:0005524
Vimu8g02463 1505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 646 873 IPR027417 -
Vimu8g02463 1505 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1259 1493 IPR003439 GO:0005524
Vimu8g02463 1505 FunFam ABC transporter C family member 10 319 632 - -
Vimu8g02463 1505 CDD ABC_6TM_ABCC_D2 945 1234 IPR044726 GO:0140359
Vimu8g02463 1505 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 258 1493 - -
Vimu8g02463 1505 FunFam ABC transporter C family member 5 908 1240 - -
Vimu8g02463 1505 SUPERFAMILY ABC transporter transmembrane region 324 624 IPR036640 GO:0005524|GO:0016020
Vimu8g02463 1505 Pfam ABC transporter transmembrane region 336 602 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g02463 1505 Pfam ABC transporter transmembrane region 944 1193 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g02463 1505 CDD ABC_6TM_ABCC_D1 338 624 IPR044746 GO:0140359
Vimu8g02463 1505 Coils Coil 497 517 - -
Vimu8g02463 1505 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 946 1222 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g02463 1505 FunFam ABC transporter C family member 10 633 886 - -
Vimu8g02463 1505 Gene3D ABC transporter type 1, transmembrane domain 323 625 IPR036640 GO:0005524|GO:0016020
Vimu8g02463 1505 Gene3D - 1244 1494 IPR027417 -
Vimu8g02463 1505 Pfam ABC transporter 668 802 IPR003439 GO:0005524
Vimu8g02463 1505 Pfam ABC transporter 1276 1424 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02463 Vimu-Chr8 32984348 32990402 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02463 622 913 Calmodulin-binding Proteins AT2G36910 29.260 5.99e-25 111