Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02457 ATGCCGGAACGGTTCTCCCTGCATGAGTTGAGAAGGTGTGTATCACTAAGGCTTCTTGCCATGAGAGTTGCATCAGCTAGTTGGGTCGGGGAAATAACAAAGAAGATGGAAGATTTTTGGAGCATGATTTGTGGTGATTCTGTTGGTTCAAAGACTATGGGAAAGCTTTCGTGTTTCGATTTCAAGTTTCTGAAAGATCCTTCCTTATGCATCAACCATTTATTGATAATATCCTTTGATGCGTTACTCTTGATCATGTTGTCTTTCGCTATGATCTACAAGTCTTTCTCGAGACCATGTCAGGGTCTAATCCAAGTGGAAAGATATTCAAAATTGCAACTGTGTTCTGCCATAACCAGTGGCTCTCTTGGGTTGTTGAATTTGTGTTTAGGCATTTGGGTTTTGGGGGAGAAGTTAAGGAAACACAATACTACTTTTCCCCTTCACTGGTGGCTACTAGAACTTTTTCAGGGGTTCACATGGTTGTTTGTGGGATTAACTGTAAGTCTCAAGCTGAAACAACTTTCAAGAGTATGGTTATGGTTGTTCTCTATATTGACATTCTTTGTTAATGGTATTGTCTGTCTTTTATCCATGTATTACTTAATTACCAGCAGAGAACTATCCTTCAAGATTGTTTTAGATGTTCTATCTCTTCTTGGAGCCTTTCTACTACTTTCATGCACATATAGTGTATGTAAAATTGAAGACACAAACAGAGAAACTAGAGAAGGCCTTTATGCCCCTTTAAGCGACCAGTTCAATGGAGTTGATTCTAATAGGTATGTAACCCCATTTGCAAAAGCTGGATTCTGTAGTAGGATGTTGTTTTGGTGGTTGAATCCACTTATGAAAAAGGGTCAAGAGAAAACCCTAGAGGATGAGGATATCCCAAAGTTGGGAGAGTCAGATCAAGCAGAAAGTTGTTATTTATTGTTTCAAAAACACTTGAATAAACAGATAGAAAAAGATCCAATGTCACCTGTGTCAATTTTGTGGATAATAATTATCTGCCATCAAAAAGAGATTTTGATATCAGGGTTCTTTGCATTGCTTAAGGTGCTGACTGTGTCTTCTGGTCCTGTACTTCTAAATGCCTTTATACTGGTAGCTGAGGGTAATGAAAGTTTTAAGTATGAAGGCTATGTATTGGTCATATCACTTCTTGTTATAAAGATCATAGAGTCCCTATCACAACGGCAGTGGTACTTCCGCAGTAGACTTATTGGGATGAAAGTCAGGTCATTGCTTACTGCGGCCATTTATAAAAAACTGTTGAGGTTGTCCAATGTTGCGAGATTGACACACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGAGAATTTCCATTTTGGTTTCACCAAACATGGACTACAAGTGTCCAACTATGTATTGCATTAGTAATACTTTTTCGTGCCATTGGGATGGCAACTATTGCCTCATTGGTAGTGATAGTTCTCACTCTGGTGTGCAATACTCCAATAGCTAAGTTACAACACAAGTTTCAGACAGAACTTATGGTGTCACAAGATGAGAGATTGAAGGCTATTTCTGAAGCTCTTTTGAATATGAAAGTTCTAAAGCTATATGCATGGGAAAATCATTTTAAAAATGCTATAGAGAAGTTAAGAAAAGAGGAACTCAAATTGTTAGCTGCAGTGCAACTACGAAAGGCATACAACGTAATTATCTTTTGGTCTTCGCCTGTTTTGGTTTCTGCTGCTTCTTTTGGGGTGTGTTACTTCCTTAAAGTTCCATTGCATGCAAATAATGTTTTCACATTTGTAGCAGCTCTACGGATTGTGCAAGAGCCAATTACAACCATCCCAGATGTTATCGGGGTGGTTATTCAAGCTAAGGTTGCATTTACTCGAATTATTAAGTTCCTTGAGGCACCTGAACTACGAAGTAACAGTTTTAGAAAAAAGAGCTTTGTTAACAATATTAATGACTCAATTATAATCAAACATGCCGATTTTTCGTGGGAAGATAATGTATTAAAGCCAACATTGAGGAACATAAATCTGGAGATTAAACATGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCTGGAAAATCAACCCTCTTATCACTGATTCTTGGAGAGGTTCCTATCACAAAAGGAACTGACCTGGAGTTGTTTCCCAATGGTGACCTAACAGAAATAGGTGAGAGAGGAGTTACCTTAAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCACGTGCTTTTTATCAGAATGCTGATATATATCTTTTGGATGATCCATTCAGTGCTGTTGATGCCCATACTGCCACAAATTTATTTAATGATTACATCATGGAAGGACTTAAAGAGAAAACGGTATTAGTAGTAACCCATCAAGTTGACTTCCTACCAGCATTTGATTATGTTTTGTTAATTTCAAAGGGGGAAATCCTTGAAGTTGCTCCTTATCATCATCTATTGAGCTCAAGTAAAGAATTCCAGAACCTCGTCAATGCTCACAAGAAGACGGCTGGTTCTAACGAGCTTGTGAATGTTACTTTTTCCAAGAGACATCAAAATTCTGTTAGAGAGATTAGACAAGCTTTCATGAAAAAGCAATTCAACATAGCACAGAGTAAATTAATAAAGCAGGAAGAGAGAGAGATAGGAGACACTGGGTTGAAGCCTTACTTACAATATCTGAATCAAATGAAGTGCTATATACTCTTCTCTGTTGCTTCTCTTTGTCACCTTGCATTTTCAATTTTCCAAATATTGCAAAACTTATGGATGGCTAAAAATGTTGATAATCATCATGTCAGCACGTTGCGGTTGATTGTAGTTTACTTCTTGATTGGAGTTATTTCGATACTTTTCATGTTCATTAGAACTCTTAGTCTTGTTTCTTTGGGGTTTCTTTCATCAAAGTATCTTTTTCTACAATTAATGAACTCACTATTTCGTGCACCAATGTCTTTTTATGACTCTACACCATTAGGAAGGATACTTAGTAGGGTTTCATCAGATCTTAGCATTGTGGACCTTGATATTCCATTTAGCCTCACCTTTACTGTGGGAGCAACAATAAACGCTTATTCAACTCTGATAGTTTTAGCAGTTGTCACTTGGCCAGTCTTGGTTATCTCAATAGCATTAGTTTATATTTCAATTCGCTTGCAGAGATATTACTTTGCCTCTGCTAAAGAAGTAATGCGGATGAATGGCACAACAAAATCCTTTGTGGCTAATCATATTGCTGAAACTGTTGCTGGAGTTGTGACAATAAGGGCTTTTGAGGAGGAATATCGTTATTTTGTAAAGAATCTTGATTTGATTGACATCAATGCTAGTTGTTTCTTCCATAGTTTTGCCTCAAATGAGTGGTTGATCCTACATTTAGAAACTGTAGCTGCAGTTGTACTTTCCTTCTCAGCACTTTGCATGGTCTTGTTTCCACCTGGGACTTTTACATCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTACACTAAGCTTTTCCTTAGTATTTTCAATTCAAAGTCAATGCAGCCTTGCAAATTACATAGTATCTGTAGAGAGGTTAAATCAGTATATGCATATACAAAGTGAGGCTGCAGAAGTAATAGAAACAAAACGCCCTCCTTTTAATTGGCCAGATAAAGGTGAAATAGAAATAAATGACTTGCAGGTACGATACAGGCCTGATGGACCCCTTATACTTCATGGAATCACATGCACATTCAAAGCAGGACACAAGGTTGGAATTGTTGGCAGAACAGGCAGTGGAAAGTCCACTCTTATTGGTTCTTTATTTCGTCTTGTGGAGCCAGCAGGTGGAAAAATTATTGTGGATGGCATAGACATATCTTCTATTGGCCTTCATGATTTGAGGTCACGTTTTGGTGTTATACCTCAGGATCCTACCCTTTTTAATGGAACTGTTAGATTCAATTTGGACCCTTTGTCTCAACACTCTGATAAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCGAGAAGTTGTCCAAGAGAAAGAAGAGGGCTTAAACTCCTCAGTTGTTGAAGATGGCTCAAACTGGAGCATGGGACAGAGGCAGCTGTTTTGTTTGGGGCGTGCTATTTTGAGAAGTAGTAAGATATTGGTGCTTGATGAAGCCACAGCATCAATTGATAATGCAACTGATTTGATTCTGCAGAAAACCATTAGGACTGAATTTGCTGATTGTACAGTAATAACAGTAGCACACAGAATACCAACTGTGATGGATTGCACTGTGGTTCTTTCAATCAGTGATGGTACGTTTCATATTGATCGTTTAAAAAAGAACCTTATGATTCCATATACAGGAAAATTGGTGGAATATGATGAACCAAACACCTTGATGAAGACAGAAGGGTCATTGTTCAGACAACTTGTCCGAGAATATTGGTCTCATTTTCACTCTTCAGAATCCGATTGA 4452 0.3819 MPERFSLHELRRCVSLRLLAMRVASASWVGEITKKMEDFWSMICGDSVGSKTMGKLSCFDFKFLKDPSLCINHLLIISFDALLLIMLSFAMIYKSFSRPCQGLIQVERYSKLQLCSAITSGSLGLLNLCLGIWVLGEKLRKHNTTFPLHWWLLELFQGFTWLFVGLTVSLKLKQLSRVWLWLFSILTFFVNGIVCLLSMYYLITSRELSFKIVLDVLSLLGAFLLLSCTYSVCKIEDTNRETREGLYAPLSDQFNGVDSNRYVTPFAKAGFCSRMLFWWLNPLMKKGQEKTLEDEDIPKLGESDQAESCYLLFQKHLNKQIEKDPMSPVSILWIIIICHQKEILISGFFALLKVLTVSSGPVLLNAFILVAEGNESFKYEGYVLVISLLVIKIIESLSQRQWYFRSRLIGMKVRSLLTAAIYKKLLRLSNVARLTHSGGEIMNYVTVDAYRIGEFPFWFHQTWTTSVQLCIALVILFRAIGMATIASLVVIVLTLVCNTPIAKLQHKFQTELMVSQDERLKAISEALLNMKVLKLYAWENHFKNAIEKLRKEELKLLAAVQLRKAYNVIIFWSSPVLVSAASFGVCYFLKVPLHANNVFTFVAALRIVQEPITTIPDVIGVVIQAKVAFTRIIKFLEAPELRSNSFRKKSFVNNINDSIIIKHADFSWEDNVLKPTLRNINLEIKHGQKVAICGEVGSGKSTLLSLILGEVPITKGTDLELFPNGDLTEIGERGVTLSGGQKQRIQLARAFYQNADIYLLDDPFSAVDAHTATNLFNDYIMEGLKEKTVLVVTHQVDFLPAFDYVLLISKGEILEVAPYHHLLSSSKEFQNLVNAHKKTAGSNELVNVTFSKRHQNSVREIRQAFMKKQFNIAQSKLIKQEEREIGDTGLKPYLQYLNQMKCYILFSVASLCHLAFSIFQILQNLWMAKNVDNHHVSTLRLIVVYFLIGVISILFMFIRTLSLVSLGFLSSKYLFLQLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLTFTVGATINAYSTLIVLAVVTWPVLVISIALVYISIRLQRYYFASAKEVMRMNGTTKSFVANHIAETVAGVVTIRAFEEEYRYFVKNLDLIDINASCFFHSFASNEWLILHLETVAAVVLSFSALCMVLFPPGTFTSGFIGMALSYGLTLSFSLVFSIQSQCSLANYIVSVERLNQYMHIQSEAAEVIETKRPPFNWPDKGEIEINDLQVRYRPDGPLILHGITCTFKAGHKVGIVGRTGSGKSTLIGSLFRLVEPAGGKIIVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTVRFNLDPLSQHSDKEIWEVLGKCQLREVVQEKEEGLNSSVVEDGSNWSMGQRQLFCLGRAILRSSKILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTVVLSISDGTFHIDRLKKNLMIPYTGKLVEYDEPNTLMKTEGSLFRQLVREYWSHFHSSESD 1483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02457 1483 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 717 1471 - -
Vimu8g02457 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1211 1432 IPR027417 -
Vimu8g02457 1483 Pfam ABC transporter 729 764 IPR003439 GO:0005524
Vimu8g02457 1483 SUPERFAMILY ABC transporter transmembrane region 332 637 IPR036640 GO:0005524|GO:0016020
Vimu8g02457 1483 ProSitePatterns ABC transporters family signature. 737 751 IPR017871 GO:0005524|GO:0016887
Vimu8g02457 1483 CDD ABC_6TM_ABCC_D1 345 632 IPR044746 GO:0140359
Vimu8g02457 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 652 835 IPR027417 -
Vimu8g02457 1483 CDD ABCC_MRP_domain2 1218 1455 - -
Vimu8g02457 1483 CDD ABC_6TM_ABCC_D2 906 1195 IPR044726 GO:0140359
Vimu8g02457 1483 Gene3D - 1203 1472 IPR027417 -
Vimu8g02457 1483 Gene3D - 650 717 IPR027417 -
Vimu8g02457 1483 Gene3D ABC transporter type 1, transmembrane domain 867 1201 IPR036640 GO:0005524|GO:0016020
Vimu8g02457 1483 Gene3D ABC transporter type 1, transmembrane domain 313 641 IPR036640 GO:0005524|GO:0016020
Vimu8g02457 1483 SMART AAA_5 1246 1438 IPR003593 GO:0016887
Vimu8g02457 1483 SMART AAA_5 686 812 IPR003593 GO:0016887
Vimu8g02457 1483 FunFam ABC transporter C family member 5 870 1201 - -
Vimu8g02457 1483 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 908 1183 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g02457 1483 SUPERFAMILY ABC transporter transmembrane region 893 1203 IPR036640 GO:0005524|GO:0016020
Vimu8g02457 1483 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 344 624 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g02457 1483 Pfam ABC transporter transmembrane region 908 1168 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g02457 1483 Pfam ABC transporter transmembrane region 344 610 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g02457 1483 Pfam ABC transporter 1237 1385 IPR003439 GO:0005524
Vimu8g02457 1483 Gene3D - 718 859 IPR027417 -
Vimu8g02457 1483 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1220 1471 IPR003439 GO:0005524
Vimu8g02457 1483 FunFam ABC transporter C family member 3 1203 1472 - -
Vimu8g02457 1483 Pfam ABC transporter 677 717 IPR003439 GO:0005524
Vimu8g02457 1483 FunFam ABC transporter C family member 10 327 640 - -
Vimu8g02457 1483 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 661 835 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02457 Vimu-Chr8 32847998 32855020 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02457 719 823 Calmodulin-binding Proteins AT2G36910 37.143 6.75e-14 75.5