Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02449 ATGAATGCGAGTGTTCAAATTTGCGATGGATGTCAATGGAGGAAATATGGGCAAAAAATATCCAAGGGTAATCCATGTCCTCATGCCTACTATCGTTGCACCATGGCACTAGGATGTCCGGTTCGTAAACAGGTGCAAAGATGCACAAAGGACAAGAGTGTGTTAATATCAGCTTACAAAGGAAATCATAACCACCCTCTTCCACCTTCAACCACGGTGATGGCAAATTCTACCTCAGCAGCTGCAACTATGTTCTTATCTTCTTCAGGTTCAACAACAAGTAACAAAGCACTAAACAACAATGTAGGAGTATTCTCTTCCTTGTACCTCTCAGCCTCTGCACCATTTCCCACTATCACCCATAACATGACCAACAACAACCCTATGCAACTGCACCGGGACACCTCCTCTTTTCCATTGCATGCAACTACTTTTCCTCAGCTACCAGGCTACCCTATCATCTTCCCTCACAAATTACAACATTCACTAGGGCAAAAACAACCTTCCTTTATGACAGATATCATGACTGCAACTGTTGCTTCCAATCCAAATTTCACTGTAGCGTTAGCAGCAGCTATCTCGTCAATTATTGGAGCTCCTAGAAGCAATGATGGAAATAATATCTACAGTAACAATGGTGGAAATTTTCTTGCTCTTGGGACATCTATGTTGCCTAGATCCACTTAA 687 0.4236 MNASVQICDGCQWRKYGQKISKGNPCPHAYYRCTMALGCPVRKQVQRCTKDKSVLISAYKGNHNHPLPPSTTVMANSTSAAATMFLSSSGSTTSNKALNNNVGVFSSLYLSASAPFPTITHNMTNNNPMQLHRDTSSFPLHATTFPQLPGYPIIFPHKLQHSLGQKQPSFMTDIMTATVASNPNFTVALAAAISSIIGAPRSNDGNNIYSNNGGNFLALGTSMLPRST 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02449 228 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 7 204 IPR044810 GO:0003700
Vimu8g02449 228 ProSiteProfiles WRKY domain profile. 2 68 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu8g02449 228 Gene3D WRKY domain 2 69 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu8g02449 228 SMART WRKY_cls 7 67 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu8g02449 228 Pfam WRKY DNA -binding domain 9 66 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu8g02449 228 SUPERFAMILY WRKY DNA-binding domain 6 68 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02449 Vimu-Chr8 32712854 32713614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02449 7 197 WRKY Transcription Factor Family AT4G04450 47.685 2.29e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu8g02449 WRKY 5.5e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02449 - - vra:106754840 415.616