Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02430 ATGATAAACAACATTGGTAATGATCTCATTCATTATAAAGTTACTGACTCTAGTGATGATCCTATAAATCCCAAGCCCAATACCTTGAGGTATGGAGCTTCTATTATTCAAGGTAAAGTGTGGATCACATTCCAAAGGGACATGCAAATTAAACTAGAGAAACCCCTTCTCATTAGTAGTTTTACCACCATTGATGGTCGAGGTGTTAATGTTCACATCGCTAATAATGCATGCTTAATGATCTTTAAGGCTACCAACATAATTATCCATGGCATTCGAGTTCACCATTGCAAACCTCAAGCCCCTGGGATCGTGATGGGGCCTGAAGGAAAGCTGATTCCTTTAGGTCATGTAGACGGAGATGCAATAAGATTGGTTACTGCTTCAAAAATTTGGATTGACCATAATACACTTTATGATTGTCAAGATGGTTTTCTTGATGTAACACGAGGTTCTACTAATGTGACTATCTCTAATAATTGGTTTAAAAACCAAGATAAGGTTATGCTTCTTGGACATGATGATGGATATGTGAGAGATAAGAATATGAAGGTTACAATGGTGTATAATCATTTTGGACCTAATTGCAATCAACGTATGCCAAGGTAA 609 0.3695 MINNIGNDLIHYKVTDSSDDPINPKPNTLRYGASIIQGKVWITFQRDMQIKLEKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHGIRVHHCKPQAPGIVMGPEGKLIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGFLDVTRGSTNVTISNNWFKNQDKVMLLGHDDGYVRDKNMKVTMVYNHFGPNCNQRMPR 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02430 202 SMART amb_all 47 202 IPR002022 -
Vimu8g02430 202 PRINTS Pollen allergen Amb family signature 119 140 IPR018082 -
Vimu8g02430 202 PRINTS Pollen allergen Amb family signature 199 202 IPR018082 -
Vimu8g02430 202 PRINTS Pollen allergen Amb family signature 18 43 IPR018082 -
Vimu8g02430 202 PRINTS Pollen allergen Amb family signature 55 71 IPR018082 -
Vimu8g02430 202 Gene3D - 6 202 IPR012334 -
Vimu8g02430 202 PANTHER PECTATE LYASE 18-RELATED 6 202 IPR045032 GO:0030570
Vimu8g02430 202 Pfam Pectate lyase 57 202 IPR002022 -
Vimu8g02430 202 SUPERFAMILY Pectin lyase-like 11 202 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02430 Vimu-Chr8 32442762 32443475 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02430 1 202 Polysaccharide Lyase AT5G09280 70.792 1.89e-114 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02430 K01728 - gmx:100780437 389.037