Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02428 ATGATAAACAACATTGGTAATGATCTCATTCATTATAAAGTTACCGACTCTAGTGATGATCCTATAAATCCCAAGCCCAACACCTTGAGGTATGGAACTTCTATTATTCAAGGATGGCTTCAATATGCCATTGGTGGAAGCATGGAACCTAGTCTCAAAAGTGAAGCTAACCTCTTTGTAACACCAACGATAGGAAATAAGGAAGTGACGTGGAGAAAGAGTAGTGATAAAAGTGGAGGTACATGGAACTTTCACTCGATAAGGGATATTTTTGAAAATGGAGCTTCTTTCAATACAACAAAAGGAGGAGATGTAAAGAATCCAAATTATACTAAAGAACAAAATTTTAAAGTTCTTGATGCGAAATTCGTGAAATATTTGACACGTTCATCTGGTGTGTTACGATATAATAAAAACTATGTATACTAG 429 0.3497 MINNIGNDLIHYKVTDSSDDPINPKPNTLRYGTSIIQGWLQYAIGGSMEPSLKSEANLFVTPTIGNKEVTWRKSSDKSGGTWNFHSIRDIFENGASFNTTKGGDVKNPNYTKEQNFKVLDAKFVKYLTRSSGVLRYNKNYVY 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02428 142 Gene3D - 33 135 IPR012334 -
Vimu8g02428 142 PANTHER PECTATE LYASE 18-RELATED 39 138 IPR045032 GO:0030570
Vimu8g02428 142 PRINTS Pollen allergen Amb family signature 42 61 IPR018082 -
Vimu8g02428 142 PRINTS Pollen allergen Amb family signature 82 106 IPR018082 -
Vimu8g02428 142 PRINTS Pollen allergen Amb family signature 113 136 IPR018082 -
Vimu8g02428 142 SUPERFAMILY Pectin lyase-like 35 134 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02428 Vimu-Chr8 32372672 32373327 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02428 39 139 Polysaccharide Lyase AT4G22080 38.462 3.37e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02428 K01728 - gmx:100780437 153.68