Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02425 ATGGCCTTTCCTAAACCTCAATACTTGTTTTTGGCTCTTTTGATTCTATTTTTTCTTTCAAAACTTAGTTTTGCAAAGCAATCGAGAATAAATGGTTTGAAATTGAATGTTATTGATAGATGTTGGAGAAAAAATCCTGAATGGAAGAGACATCAATATCAATTAGCCACTTGTTCTGTAGGTTATGCTGGCAAGATGATAAACAACATTGGTAATGACCTCATTCATTATAAAGTTACCGACTCTAGTGATGATCCTATAAATCCCAAGCCCAACACCTTGAGGTATGGAACTTCTATTATTCAAGGTAAAGTGTGGATCACATTCCAAAGGGACATGCAAATTAAACTAGAGAAACCCCTTCTCATTAGTAGTTTTACCACCATTGATGGTCGAGGTGCTAATGTCCACATTGCTAATAATGCATGCTTAATGATTTTTAAGGTGATTCCTTTAGGTCAAGTAGACGGAGATGCAATAAGATTGGTTACTGCTTCAAAAATTTGGATTGACCATAATACACTTTATGATTGTCAAGATGGTTTGCTTGATGTAACACGTGGTTCTACTGATGTGACTATCTCCAATAATTGGTTTAAAAACCAAGATAAGGTTATGCTTCTAGGACATGATGATGGATATGTGAGAGATAAGAATATGAAGGTTACAGTGGTGTACAATCATTTTGGACCTAATTGCAATCAACGCATGCCAAGGATTCGTCATGGATATGCACACGTAGCCAACAATTTTTATCAAGGATGGCTTCAATATGCCATTGGTGGAAGCATGGAACCTAGTCTCAAAAGTGAAGCTAACCTCTTTGTAGCACCAACGATAGGAAATAAGGAAGTGACGTGGAGAAAGAGTAGTGATAAAAGTGGAGGTACATGGAACTTTCACTCGATAAGGGATATTTTTGAAAATGGAGCTTCTTTCAATACAACAAAAGGAGGAGATGTAAAGAAACCAAATTATACTAAAGAACAAAATTTTAAAGTTCTTGATGCGAAATTCGTGAAATATTTGACACGTTCATCTGGTGTGTTACGATATACTAAAAACTATGTATACTAG 1077 0.3565 MAFPKPQYLFLALLILFFLSKLSFAKQSRINGLKLNVIDRCWRKNPEWKRHQYQLATCSVGYAGKMINNIGNDLIHYKVTDSSDDPINPKPNTLRYGTSIIQGKVWITFQRDMQIKLEKPLLISSFTTIDGRGANVHIANNACLMIFKVIPLGQVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFKNQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNFYQGWLQYAIGGSMEPSLKSEANLFVAPTIGNKEVTWRKSSDKSGGTWNFHSIRDIFENGASFNTTKGGDVKKPNYTKEQNFKVLDAKFVKYLTRSSGVLRYTKNYVY 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02425 358 Gene3D - 35 351 IPR012334 -
Vimu8g02425 358 SMART amb_all 112 281 IPR002022 -
Vimu8g02425 358 PANTHER PECTATE LYASE 18-RELATED 153 354 IPR045032 GO:0030570
Vimu8g02425 358 Pfam Pectate lyase 134 275 IPR002022 -
Vimu8g02425 358 PRINTS Pollen allergen Amb family signature 298 322 IPR018082 -
Vimu8g02425 358 PRINTS Pollen allergen Amb family signature 258 277 IPR018082 -
Vimu8g02425 358 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Vimu8g02425 358 PRINTS Pollen allergen Amb family signature 329 352 IPR018082 -
Vimu8g02425 358 SUPERFAMILY Pectin lyase-like 36 319 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02425 Vimu-Chr8 32322708 32324195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02425 66 285 Polysaccharide Lyase AT5G09280 66.935 4.47e-125 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02425 K01728 - gmx:100780437 570.466