Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02415 ATGAATGTTATTGATCAATGTTGGAGAAAAAGTCCTGAGTGGAGGAGACATCGATATCAATTAGCCACATGTTCTATGGGTTATGCTGGAAAGATGATAAACAACATTGGGAATGACCTCATTTATTATAAAGTTACTGACTCTAGTGATAATCCTATAAATCCTAAGCCTAACACCTTGAGGTATGGAACATCTATTATTCAAAGTAAAGTGTGGATCACATTCCAAAAGGACATGCAAATTAAACTAGAGAAACCTCTTCTCATTAGTAGTTTTACCACCATTGATGGTCGAGGTGTTAATGTCCACATCGCTAATAATGCATGCTTAATTATCTTTAAGGCCACCAATATAATTATCCATGGCATTCAAGTTCACCATTGCAAACCTCAAGCCCCTGGGATTGTGATGGGGCCTGAAGGAAAGGTTATTCCTATAGGTCATGTAGATGGAGACGCAATAAGATTGGTTACTGCTTCAAAGATTTGGATTGACCATAATACATTTTATGATTGTCAAGATGGTTTGCTTGATGTAACACGAGGTTCTACTGATGTGACTATCTCCAATAATTGGTTCAAAAACCAAGATAAGGTTATGCTTCTTGGACATGATGATGGATATGTAAGAGACAAGAATATGAAGGTTACAGTGGTGTACAATCATTTTGGACCTAATTGCAATCAACGTATGCCAAGGATTCGTCATGGATATGCACATGTAGTCAATAATTTTTATCAAGGATGGCTTCAATATGCCATTGGTGGAAGCATGGAACCTAGTCTTAAAAGTGAAGCTAACCTCTTTATAGCACCAACCATAGGAAATAAGGAGGTGACATGGAGAAAGAGTAGCGATAAAAGTGGAGGTACATGGAACTTTCATTCGATAAGGGATATTTTTGAAAATGGAGCTTCCTTCAAAATAACAAAAGGAGGCAGTGTGAAAAGACCAAATTATACTAAGGAACAAAGTTTTAAAGTTCTTGATGCCAAATTCGTTAAATTGTTGACACGTTCATCTGGCGTGTTACGATACAATAAAAATTCTGCATACTAA 1059 0.3664 MNVIDQCWRKSPEWRRHRYQLATCSMGYAGKMINNIGNDLIYYKVTDSSDNPINPKPNTLRYGTSIIQSKVWITFQKDMQIKLEKPLLISSFTTIDGRGVNVHIANNACLIIFKATNIIIHGIQVHHCKPQAPGIVMGPEGKVIPIGHVDGDAIRLVTASKIWIDHNTFYDCQDGLLDVTRGSTDVTISNNWFKNQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVVNNFYQGWLQYAIGGSMEPSLKSEANLFIAPTIGNKEVTWRKSSDKSGGTWNFHSIRDIFENGASFKITKGGSVKRPNYTKEQSFKVLDAKFVKLLTRSSGVLRYNKNSAY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02415 352 SMART amb_all 78 275 IPR002022 -
Vimu8g02415 352 Gene3D - 1 345 IPR012334 -
Vimu8g02415 352 SUPERFAMILY Pectin lyase-like 2 319 IPR011050 -
Vimu8g02415 352 PANTHER PECTATE LYASE 18-RELATED 1 349 IPR045032 GO:0030570
Vimu8g02415 352 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Vimu8g02415 352 PRINTS Pollen allergen Amb family signature 323 346 IPR018082 -
Vimu8g02415 352 PRINTS Pollen allergen Amb family signature 24 41 IPR018082 -
Vimu8g02415 352 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Vimu8g02415 352 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Vimu8g02415 352 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Vimu8g02415 352 PRINTS Pollen allergen Amb family signature 292 316 IPR018082 -
Vimu8g02415 352 Pfam Pectate lyase 87 269 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02415 Vimu-Chr8 31854065 31855470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02415 32 279 Polysaccharide Lyase AT5G09280 70.161 3.63e-141 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02415 K01728 - gmx:100780437 615.15