Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02397 ATGATTTTGGCCATTACTGCCGCAAAGAATTGGCATCTACATCAACTTGATGTAGATAATGCCTTCCTTGATGGAGACTTAAATGAAGAGGTGTACATGGAACCATCACCAGGGCTGGATATTCAGGAAAAAGGACAATTCGACGCAACAGTTCGACGGCGCGAGTTTGGTGGTGTGGACGCTGACGGAGGTTCGTTGCTGGGTGGCGCTCTTCCATTTCTTACTCTCTGTTCGAAGCGGTTCGTTGGTTTGAAGCGTGAGGTTGTCGCCCTAAGGTGGTTTGAAGCGGTTGCAGTTGCGGACGCTGTCGGAGGAGCGGTGGTGGCTGGTTTGCGGCTAGGTGGTGGGGGTTGTTGGGGTGGGCGTGTCAAGGGCGTTGCAGTGAAGTGGTGTTGGTTTGGCGACTTGATGTCAAGGTGGAAGCGGAGGGAGGATGTTTGCTGCGGAATCTCGCCGGAGAGGCCCACCACTCTGCTGTTTGAGGAGCACTCAACGCCGATTCACGCAGCAGAGCAAGCGTCGGCTCTAGTCCAATTGGAGAGAAGGTTGTTGTGGGTGTCGTCACAAAAAATGGTGAAGGCCAATGTCAATTGCAACAATGTGTTTGTGACTGGGTCATGGTCCTGGTCCTGGTTTATGCGACTACTTCTCAAACTGCGAGGAAGCAAAATTTTGTATGACGGTGGTTTGGTAGAGAAGATGGTGTTTATTGTGCGTGGAAAATTGGAGAGCGTTGGGGAAGATGGAATCAGTGCTCCCCTTTATGAAGGAGTGTTGCAGAAAAGCAAGGATTCCAAGGCCAAAGCTGGTCAGCTGCGGCAACAGGGTGGATATCATGGAAGGGTCGTGGCTTTAGATCAAATGGAACAATCCAAGCAGCCACAACCCTTCGGTAATTACCGAAGGTTTTCGTCCCTCAATAATTACCAAAGGCTTTTGTCCCTCGGTAATTACCGAAGGCTTTTGTCCCTCGGTAATTACCGAAGGCTTTCGTCCCTCGGTAATTACCGAAGGGCAAAAGCCGTCGGTAAAGGTAAGCCGTCGGTAATAGGCTATTACCGACTGTTTTTGGCTGTTTCCGAGGGATTTGGACCGTCGGGTTTTGAAGTTGCTAGATCTAAGAAAGGAATACACCAATTCCAAAGGACATATGTTTTGGATATTCTTGAAGAGACAGGGATGCTGGGATCTAAGCCTTGCACAATTCCCTTTATAACCCAGGAAGAGGAAGACCAACACGAAGCCAAACGAGCTCAACCAACAATGAAGCTTGTGGTGCAGCAAAATGAAGATTGTGGTTTGGGAAAAAATGAAGCCAGTAGGGAAACGAAGCTTGTGGTTTGGAGAAATGAAGGCAGCGGGGAGGGATTAGGGTTTGAGGAAAAATTTTTAGCGAATTGA 1401 0.4904 MILAITAAKNWHLHQLDVDNAFLDGDLNEEVYMEPSPGLDIQEKGQFDATVRRREFGGVDADGGSLLGGALPFLTLCSKRFVGLKREVVALRWFEAVAVADAVGGAVVAGLRLGGGGCWGGRVKGVAVKWCWFGDLMSRWKRREDVCCGISPERPTTLLFEEHSTPIHAAEQASALVQLERRLLWVSSQKMVKANVNCNNVFVTGSWSWSWFMRLLLKLRGSKILYDGGLVEKMVFIVRGKLESVGEDGISAPLYEGVLQKSKDSKAKAGQLRQQGGYHGRVVALDQMEQSKQPQPFGNYRRFSSLNNYQRLLSLGNYRRLLSLGNYRRLSSLGNYRRAKAVGKGKPSVIGYYRLFLAVSEGFGPSGFEVARSKKGIHQFQRTYVLDILEETGMLGSKPCTIPFITQEEEDQHEAKRAQPTMKLVVQQNEDCGLGKNEASRETKLVVWRNEGSGEGLGFEEKFLAN 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02397 466 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 2 43 IPR013103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02397 Vimu-Chr8 31375048 31379597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02397 221 257 Ion Channels AT3G17700 70.270 1.92e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02397 - K05391 vra:106780319 82.0333