Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02387 ATGGAACAGAAACACGTTCTGTTATCAGCATTGAGCGTTGGGGTTGGGTTAGGGCAGAAATGGGTTGGCGGGAATCGTGATTCTGATGAACTTTCCCTGGAGCAGATTATGCTGGAGCTCAAGAAGCTGGTGGTTGAAGGAAGGGACGGAAAACATACATTTGAGGACTTTCCATATTACTTAAGGAACCTCTCACCAGCAAGCAGGTCTATTTTGCTATCTGGTCCAGCAGGTATACAAGCCCTTGCCAGAGCTTTAGCTCATTACTTTGAATCAAAGTTGCTGTTGTTAGATATTACTGACTTCTCTGTGAAGTTGCAAAATAAATTTGGATGTTCCCGTAAGATACCGTCTTTGAAAAGGTCAATATCGGAGGCAACCTTGGAGCGAATGTCTGCTATGTTTGGGTCCTTTTCGATGCTTTCTTCACAAGGAGAAACAAGAGGAATTGTACGTCAACAAAGCAGTGCTGCTGAAAGTTTCAATCCTCCAAAGCTTAGGAGGAATGCTTCTGCTGCATCTGATATAAGTAGCACTGCTTCCCAGGGTGGTCCAACACTTCCAGCACGTTTGAAGCGCACAAGTAGCTTGTGTTTTGATGAGAAGCTCTTTGTGCAGGCACTTTACAAGATATTAGATTCAGATGACGATTGCAAAGAAGTTGATGAAAGGCTCACTGCGCTGTTCCCCTACAACATTGAAATCAAAGCTCCTGAAGATGAAACTCATTCTGGCAATTGGAAAGGATCACTGGAAGAGGACATGAAAGCTATTCAGTTCCAAGATAACAGAAACCACATTGCTGAAGTACTAGCAGCAAATGACATTGAATGTGATGACTTGAACGCAATCTGCCATTCAGATACTATCGTACTCAGCAATTATATTGAAGAAATTGTAGTATCTGCAATATCTTACCATTTGATGCATACCAAGGATCCAGAATACCGAAATGGAAAGCTTGTTATATCAGCCAATAGTTTGTCCCATGGATTGAGTCTGTTCCAGGAAGGCAAGAGTAGTGGGAATCTGAAGACTAATGAATCTAACAAGGAAAATGCTGGGGAAGATGTTGCTGGTGCAAAGAATGAAGTTAAGAGTGACAATCAAGCACCTGAAAACAAGAGTGAGACAGAGAAATCCATCCCTGTAACAAAGAAAGAAGGTGAAAATCCTACACCTGCAAAGGCGGAAGTTCCTGACAACGAGTTTGAGAAGCGCATAAGACCTGAGGTTATCCCCGCAAATGAAATAGGGGTTACATTTGCAGATATTGGTGCATTGGATGAGATCAAAGAATCACTTCAAGAGCTGGTAATGCTTCCCCTTAGAAGGCCTGACCTCTTCAAAGGTGGACTTCTAAAGCCGTGCAGAGGTATATTGCTTTTTGGGCCTCCTGGTACTGGGAAAACAATGCTAGCGAAAGCCATTGCAAATGAAGCTGGTGCAAGTTTCATTAATGTCTCAATGTCCACTATTACATCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGAGCTCTATTCACACTGGCAGCTAAGGTTGCCCCAACAATCATCTTTGTTGATGAGGTCGACAGCATGCTTGGACAGAGGACTAGAGTAGGAGAGCATGAGGCCATGAGGAAGATAAAAAATGAGTTCATGACACACTGGGATGGGCTATTAACAGGACCTAATGAGCAAATTTTGGTTCTTGCTGCAACCAACAGACCATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGCGTAGCAGGGTCCTGGTTGGTCTTCCATCTGCTGAGAACAGGGAGAAGATCTTGAAGACTCTTCTGGCCAAAGAAAAACATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCATCACTGCGGCTTATCGACCTGTTAGAGAGCTAATACAGCGGGAGAGAGTAAAAGAAATGGAAAAGAAGAAAAGAGAGGCTGAAGGCCAAAACTCAGAGGATGTTTCAAACAATAAAGATAACGAAGACCAAGAAATTACCCTCAGGCCTTTAAATATGGAAGACATGAAGCAGGCCAAGAGTCAGGTGGCAGCAAGTTTTGCATCAGAAGGATCCGTAATGAATGAGTTGAAGCAGTGGAATGATTTATATGGAGAAGGAGGTTCAAGGAAGAAGCAACAACTCACTTACTTCCTTTAG 2205 0.4272 MEQKHVLLSALSVGVGLGQKWVGGNRDSDELSLEQIMLELKKLVVEGRDGKHTFEDFPYYLRNLSPASRSILLSGPAGIQALARALAHYFESKLLLLDITDFSVKLQNKFGCSRKIPSLKRSISEATLERMSAMFGSFSMLSSQGETRGIVRQQSSAAESFNPPKLRRNASAASDISSTASQGGPTLPARLKRTSSLCFDEKLFVQALYKILDSDDDCKEVDERLTALFPYNIEIKAPEDETHSGNWKGSLEEDMKAIQFQDNRNHIAEVLAANDIECDDLNAICHSDTIVLSNYIEEIVVSAISYHLMHTKDPEYRNGKLVISANSLSHGLSLFQEGKSSGNLKTNESNKENAGEDVAGAKNEVKSDNQAPENKSETEKSIPVTKKEGENPTPAKAEVPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTGPNEQILVLAATNRPFDLDEAIIRRFERSRVLVGLPSAENREKILKTLLAKEKHENLDFKELATMTEGYTGSDLKNLCITAAYRPVRELIQRERVKEMEKKKREAEGQNSEDVSNNKDNEDQEITLRPLNMEDMKQAKSQVAASFASEGSVMNELKQWNDLYGEGGSRKKQQLTYFL 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02387 734 Coils Coil 652 672 - -
Vimu8g02387 734 MobiDBLite consensus disorder prediction 152 187 - -
Vimu8g02387 734 Gene3D - 419 702 IPR027417 -
Vimu8g02387 734 Pfam AAA+ lid domain 613 655 IPR041569 -
Vimu8g02387 734 ProSitePatterns AAA-protein family signature. 563 582 IPR003960 GO:0005524|GO:0016887
Vimu8g02387 734 Pfam ATPase family associated with various cellular activities (AAA) 460 586 IPR003959 GO:0005524|GO:0016887
Vimu8g02387 734 SMART AAA_5 456 594 IPR003593 GO:0016887
Vimu8g02387 734 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 419 595 - -
Vimu8g02387 734 MobiDBLite consensus disorder prediction 339 403 - -
Vimu8g02387 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 653 IPR027417 -
Vimu8g02387 734 Gene3D - 593 696 - -
Vimu8g02387 734 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 40 733 - -
Vimu8g02387 734 MobiDBLite consensus disorder prediction 656 679 - -
Vimu8g02387 734 Coils Coil 344 364 - -
Vimu8g02387 734 MobiDBLite consensus disorder prediction 350 403 - -
Vimu8g02387 734 MobiDBLite consensus disorder prediction 171 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02387 Vimu-Chr8 31053228 31059934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02387 420 652 Calmodulin-binding Proteins AT3G56690 39.241 8.09e-41 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02387 - - gmx:100804099 1260.36