Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02322 ATGGAAATCCTCGTCAAGCAACCTCGAGTCCATCTCCAACTCGTAATGAAACCCCAACTCACAGGTACCAATACGTTTCTCAGCTCTATCCATAGGGTTTATCCCAAGCAACAGAGAGATAAAGTGTTTGAAGATGGAGATGGAGACTCTGCTGATGGAGATCGGACAAAAACCGATGTAGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCACAAAGTTGTCAAGAATAGCCTTCACCCGAGTAATAACCTTGGCCTACTGCCTCTGCAGAAGCCAAAGGACTTTGTGAAACGGCTTCTAAAGAAGCACTACAGGAAAAGAATGATAGTTGTACAAGCTCTGAGTCATCCTTGGTTGAGGGATAACAGCCGACCACTCTCTTTAAATAGATATAAACTTGTGAAGGCTTATCTTCTTGCAACACCACTCAAACGTGCAGCAGTGAAGGTAGAGGACATGCTTAAAAGAAGTTTTGCCGAATTCACCTCATGTTATCACTGTTGA 513 0.4327 MEILVKQPRVHLQLVMKPQLTGTNTFLSSIHRVYPKQQRDKVFEDGDGDSADGDRTKTDVDVLDDGYKWRKYGHKVVKNSLHPSNNLGLLPLQKPKDFVKRLLKKHYRKRMIVVQALSHPWLRDNSRPLSLNRYKLVKAYLLATPLKRAAVKVEDMLKRSFAEFTSCYHC 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02322 170 Pfam WRKY DNA -binding domain 64 84 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu8g02322 170 Gene3D WRKY domain 54 112 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu8g02322 170 ProSiteProfiles WRKY domain profile. 58 114 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu8g02322 170 SUPERFAMILY WRKY DNA-binding domain 57 84 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02322 Vimu-Chr8 30286107 30288563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02322 69 145 EF-hand Containing Proteins AT2G46700 51.807 3.70e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu8g02322 WRKY 1.5e-05 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02322 K13412 - gmx:100792058 87.4261