Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu8g02308 | ATGGCTTCCGATCTTGAGGCGAAAGCCAAAGAAGCCTTTGTGGAAGACCACTTCGAACTCGCAGTGGACCTTCTATCTCAGGCAATTAACCTTGAACCCAACAAAGCTGAACTCTATGCCGACCGCGCTCAAGGCAACATCAAATTGAACAACTTAACTGAGGCTGTTGCTGATGCTAACAAAGCAATTGAATTGAATCCTTCTCTGCCAAAAGCATATTTACGGAAAGGTACTGCATGCTTGAAGCTTGAGGAGTATCAGACTGCCAAGGCTGCTCTGGAGATTGGTGCTTCATTGTCTCCAGACAACCCAAGATTTGTTAATTTAATCAAAGAGTGTGATAAGCTCATTGCAGAAGAATCTTATACCACCATACCTATACAGGAAAAGACCATAGCGCAGGATGATAATCCAAAAGATGTTCAACGACAGGATGATCTTCCAGAGAAGCCACCAGTTGCTGTGAATAAACCTAAATATAGGCATGAATTCTACCAGAAACCTGATCAGGTGGTTGTAACCATATTTGCAAAGAAAATCCCCAAGGAAAGCATAACTGTTGAATTTGGCGAACAAATACTAAGTGTTAGTATTAATGTCCCAGGGGAAGATGCATATGTTTTTCAAACTCGCTTATTTGGAAAGATTGTACCCTCCAATTGCCGGTATGAAGTATTGTCAACCAAAATTGAAATTCGGCTTGAGAAAGCAGAACCTATTCATTGGTCATCTCTTGAATTCACCAAAAACGTTGTAGTTCCACAGAGGGTTAATGCCTCTTCAGTTACTGCAAGTCATAGACCTTCTTACCCGTCCTCAAAACAAACCAGAGATTGGGACAAGATCGAAGCTCAAGTCAAGAAAGAGGAGAAAGATGAAAAGCTCGACGGGGATGCTGCATTGAACAAATTTTTCCGGGAAATATACCAAGATGCAGATGAGGATACCAGAAGAGCAATGAAAAAGTCATTTGTGGAGTCTAATGGAACTGTGCTGTCTACAAACTGGAAAGAAGTGGGATCAAAGAAGGTGGAGGGAAGTCCTCCTGATGGCATGGAGTTGAAGAAATGGGAATATTAA | 1080 | 0.4176 | MASDLEAKAKEAFVEDHFELAVDLLSQAINLEPNKAELYADRAQGNIKLNNLTEAVADANKAIELNPSLPKAYLRKGTACLKLEEYQTAKAALEIGASLSPDNPRFVNLIKECDKLIAEESYTTIPIQEKTIAQDDNPKDVQRQDDLPEKPPVAVNKPKYRHEFYQKPDQVVVTIFAKKIPKESITVEFGEQILSVSINVPGEDAYVFQTRLFGKIVPSNCRYEVLSTKIEIRLEKAEPIHWSSLEFTKNVVVPQRVNASSVTASHRPSYPSSKQTRDWDKIEAQVKKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEY | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu8g02308 | 359 | CDD | p23_CS_SGT1_like | 163 | 246 | - | - | |
| Vimu8g02308 | 359 | MobiDBLite | consensus disorder prediction | 132 | 152 | - | - | |
| Vimu8g02308 | 359 | PANTHER | PROTEIN SGT1 HOMOLOG | 1 | 357 | IPR044563 | GO:0051087 | |
| Vimu8g02308 | 359 | MobiDBLite | consensus disorder prediction | 133 | 152 | - | - | |
| Vimu8g02308 | 359 | FunFam | Protein SGT1 homolog | 1 | 129 | - | - | |
| Vimu8g02308 | 359 | Pfam | CS domain | 161 | 236 | IPR007052 | - | |
| Vimu8g02308 | 359 | ProSiteProfiles | TPR repeat profile. | 36 | 69 | IPR019734 | GO:0005515 | |
| Vimu8g02308 | 359 | Pfam | SGS domain | 277 | 357 | IPR007699 | - | |
| Vimu8g02308 | 359 | ProSiteProfiles | CS domain profile. | 157 | 246 | IPR007052 | - | |
| Vimu8g02308 | 359 | Gene3D | Tetratricopeptide repeat domain | 1 | 150 | IPR011990 | GO:0005515 | |
| Vimu8g02308 | 359 | ProSiteProfiles | SGS domain profile. | 269 | 359 | IPR007699 | - | |
| Vimu8g02308 | 359 | SMART | tpr_5 | 2 | 35 | IPR019734 | GO:0005515 | |
| Vimu8g02308 | 359 | SMART | tpr_5 | 70 | 103 | IPR019734 | GO:0005515 | |
| Vimu8g02308 | 359 | SMART | tpr_5 | 36 | 69 | IPR019734 | GO:0005515 | |
| Vimu8g02308 | 359 | FunFam | Protein SGT1 homolog A | 158 | 249 | - | - | |
| Vimu8g02308 | 359 | SUPERFAMILY | HSP20-like chaperones | 145 | 254 | IPR008978 | - | |
| Vimu8g02308 | 359 | Gene3D | - | 154 | 261 | IPR008978 | - | |
| Vimu8g02308 | 359 | SUPERFAMILY | TPR-like | 3 | 113 | IPR011990 | GO:0005515 | |
| Vimu8g02308 | 359 | Pfam | Tetratricopeptide repeat | 36 | 68 | IPR019734 | GO:0005515 | |
| Vimu8g02308 | 359 | Pfam | Tetratricopeptide repeat | 71 | 103 | IPR019734 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu8g02308 | Vimu-Chr8 | 30043885 | 30048488 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu8g02308 | 1 | 101 | U-box Gene Family | AT3G07370 | 29.524 | 2.39e-06 | 46.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu8g02308 | K12795 | - | gmx:100780174 | 638.262 |