Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02245 ATGTCACAGGAACTATTACAGATGCAAAAGCAAGTGGAGCGAAGCAACACCGAACCCAACATGTTCATCGTCACCTACACCGGCGAACACAAACACGCAAAACCCGTTCACCGGAACTCCCTCGCTGGCAGCACCCGAACCAAGCCGTCTCCAACCGGTTTACCCGAAGCCAACGAAGCTGTTTCTGGTATCAAAATAGAGAACGCGTGTTCATCGACTTCTGAGCTTTCTACGACGTCGTTGAAGTCTGGCACGCCGGAAAACGAGGAAACAGTCGCCGACGGCGAACCTGATTTCCCTGAGATGGAAGTTGATCCTGACGCGCTGTCTGACAACGACTACGACCTTTTGATACCCAACACTGGTGCCATGTCGGACGCTGTTCTCTTGGGGTTAACCAATGGAGCTCAAACAAAGGGATCGGATCCGAATAGCGAATCCGGGTTGCCCCAGTCCTAA 459 0.5251 MSQELLQMQKQVERSNTEPNMFIVTYTGEHKHAKPVHRNSLAGSTRTKPSPTGLPEANEAVSGIKIENACSSTSELSTTSLKSGTPENEETVADGEPDFPEMEVDPDALSDNDYDLLIPNTGAMSDAVLLGLTNGAQTKGSDPNSESGLPQS 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02245 152 Gene3D WRKY domain 2 36 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu8g02245 152 Pfam WRKY DNA -binding domain 8 32 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu8g02245 152 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 10 107 IPR044810 GO:0003700
Vimu8g02245 152 SUPERFAMILY WRKY DNA-binding domain 8 35 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu8g02245 152 MobiDBLite consensus disorder prediction 91 110 - -
Vimu8g02245 152 ProSiteProfiles WRKY domain profile. 1 35 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu8g02245 152 MobiDBLite consensus disorder prediction 65 87 - -
Vimu8g02245 152 MobiDBLite consensus disorder prediction 27 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02245 Vimu-Chr8 29197440 29197923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02245 9 52 WRKY Transcription Factor Family AT5G52830 72.727 5.90e-17 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu8g02245 WRKY 7.9e-05 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02245 - - gmx:100796829 174.866