Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02223 ATGGTATCCAAAAACCCGAACCCGCCGGAGGGATTCTACTTGGATCCGACTGTCATGGCTCTCCCAGGGATGCCTCCCTTCGCCTCCGTCTCTGCTGCTGCCGCCGCCGCCGTCTCCGCCTCCAACTCCTCGGAAGATGCAGCCAAGAAGATCCGTAAGCCCTACACTATCACCAAGTCGCGGGAGAACTGGACCGAACCAGAACACGACAAGTTCCTCGAAGCCCTTCAACTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACTGTTATACAGATACGTAGTCATGCACAGAAATACTTTCTCAAAGTTCAGAAGAGTGGAGCAAGTGAACATCTTCCGCCACCCAGACCTAAAAGAAAAGCAGCACATCCATATCCTCAAAAAGCTTCCAGAAATGCCCCTGTACTCCCACAAGTATCAGGATCTTTTCATTCTTCATCTTCTTTGCTTGAACCTGGATATATCCTGAAAAATGATTCCCCAGCAATGCTTAAAATTCCTATGAACACTGTGGTGTCATCCTGGTCAAACAACACCTTGCAAACTGTCAATTTATCCCCTGTGACAAAAGTGAATAATCCTTGCAGTAGTGGTGAAAGCACTCCTAAAGTGCGCCCAGCTGTTGAATCTCATGGTCCAGGACCTCATCAAGGGAATAAAATCCATCCATTGAGAGGCAAGGTTCTTCCAGATTTTACTCAGGTATATGGTTTCATAGGCAGTGTATTTGATCCAAATGCAACTGAACATCTGCAGAAGCTAAAAAAGATGGACCGTATAGACGTTGAGACAGTATGTTTATGTTCCTCCATCTAG 834 0.4616 MVSKNPNPPEGFYLDPTVMALPGMPPFASVSAAAAAAVSASNSSEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGASEHLPPPRPKRKAAHPYPQKASRNAPVLPQVSGSFHSSSSLLEPGYILKNDSPAMLKIPMNTVVSSWSNNTLQTVNLSPVTKVNNPCSSGESTPKVRPAVESHGPGPHQGNKIHPLRGKVLPDFTQVYGFIGSVFDPNATEHLQKLKKMDRIDVETVCLCSSI 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02223 277 Gene3D - 63 111 - -
Vimu8g02223 277 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Vimu8g02223 277 MobiDBLite consensus disorder prediction 112 144 - -
Vimu8g02223 277 SMART sant 60 108 IPR001005 -
Vimu8g02223 277 CDD SANT 63 106 IPR001005 -
Vimu8g02223 277 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Vimu8g02223 277 MobiDBLite consensus disorder prediction 198 230 - -
Vimu8g02223 277 FunFam protein REVEILLE 6 isoform X1 63 111 - -
Vimu8g02223 277 ProSiteProfiles SANT domain profile. 59 110 IPR017884 -
Vimu8g02223 277 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Vimu8g02223 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vimu8g02223 277 PANTHER SWI/SNF COMPLEX-RELATED 34 270 - -
Vimu8g02223 277 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02223 Vimu-Chr8 28952423 28959944 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu8g02223 Myb_DNA-binding 3.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02223 - - vum:124832036 505.753