Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02200 CGCATCACTCATCCTTTCCCTGTTCTCTCTCTCTTTGTTGTTCTCTTCTCTCCAGAAGATGGACCAGTCTCTGCTGAGAGGCGAAAGCAGTGGCCTCGGCTCCCGCCGGCGAGGACTGTTCCGGCGTTCCGACGCTATAACCTACGGTTCCAACTACGAGAAAGCCGCTGCGCTCATCGATCTGGGGGAATTGTTCTGTATGTTGTGGGAAAGTTGTCACTGATGTCTCTGACTTCAAGTTTGCTCGAACGGTGGTCTTCTGTCAAAGCTAAGGACCAGAGGGCCTTACTACCAACCTGTGCTGAAGATGGTGTTGGTCTCCCTGAACAAATTCTGGATTCATCAAACTTCCAAAATTATGCAAGATTTTATTTTATATTCATTAAATTCAATCTCATATGGTCTCTTAGTTATTTTGCTTTGATAGTCCTGAATTTCCTGGAGAAACCTCTGTGGTGTAAAAAACTCGCCACACATTCCTGCAACGATAGAGAGTATTTCTATTTGGGTCAATTGCCGTATCTTACTGATGCAGAATGTCTTATTTATGAGGCAATAACTCTTCTTGTGCTAATCGTACATACTTTCTTCCCATTGTCATACGAAGGATCTCGTATATATTGGAAAAGTACTTTTAATCAATTGAAGTTTGATATGAGGCAGGTCCAATACGAGAAGGCCATAGAGGAAGAGCATAATGAAGAGAAAGTCATTCCAAGTGCAAGAATGCTTGGTTGTGAAATTGTTAGAGTCATGTGTAATATGATTAGTGGCCCCGCTATCATGGTTTTCTGTCTATTAGTTCTTGTTGTTGATACGCTGCTCTATGCCTTTTACTTGTCTCCACTGGCTTTTGATTTTCTACCTTTCAGAATTGCACCTTATATCAGAGTGGTTCTTTTTGTTCTGAACATTAGGGAGCTACGAGAAACCATCACTATCTTGTTTGGGATGCTTGACACATACTTAAATGTTTTGGCACTGGGACTTCTGTTTCTTCTTTTTGCTAGTTGGGTGGCATATGTGTTTTTTGAGGATACAATACAGGGGAAAACAGTATTCACTTCATATGGTGCTACGTTGTATCAAATGTTTCTTTTATTTACCACATCCAATAATCCAGATGTTTGGGTTCCTGCATACAAGTCTTCTCGTTGGTACTGCCTCTTTTTTGTACTGTTTGTGCTGGTGGGGGTTTACTTTGTTACAAACCTTATCCTTGCCGTTGTCTATGATAGTTTCAAGAGTGAGCTTGTGAAACAAGTTTTTGAAAAGGATCTTCTGAGAAGAACTATGCTGGATAAAGCTTTTAATCTCTTAGATACACTTAATATTGGAGCTCTCAACAAAAATCAATGCATAAGGCTCTTTGAGGAGCTGAACAAGTACAGGACTTTGCCAAAAATCTCCAGTGAAGAATTTGAGCTGATATTTGATGAGCTGGATGATAGTCATGATATAAAGATCAACAAGGATGAATTTGCTGATATTTGCAATGCAATTGCTTTAAAATTTCAGAAGGAAGATGTTATGTCTTACTTTGAGTATTTAGCATTCTACGATTGGCCCAGCTCAAAGACATTGAAAGAATTTGTAAAGAGTGCTATGTTTGGATACATAGTGTCCTTCATTCTCATAGTAAATCTGGTTGCAGTTATTATTGAGACAACGATGATCAGTCTTTGCTTTCTTTCAGGGTGGATATATGTAGTAGAAATGCTTTTAAAGGTTTATGCATACGGATTTGAGAACTACTGGCGGGATGGTCAAAATCGCTTTGATTTTGTTATCACGGTGATAATTGTCATTGGAGAAACTGTAACTTTTGCTGTACCTGATGATGCTCTTCCTTTTATCGCAAATGGAGAATGCATTTATTTGAGGATGCTATTACCCATTGCTTTGCCCGTTCCCTTACAGGATTCGTTACCTTCTTCTTGCAAGAATGTTGAGATTAATAAGACTCCTAATGCATGTCCAGAGATACCGAGCCTTTGTAGCAACTTTCTTGACTCTCATACCAAGTTTGATGCCATACCTAGGGATCATATTTTGTGTCTTATGCATTTATTGTTCGCTTGGTGTACAGGTGAATTTTTGGTGGAATTGTTAATGCTGGAAACCCGGAATTGGAATCAACAGCTCTTGCTGAAAATGAAAAATAGCTATTTGGTTTTCAATTTCAATGATTACCCTAATGGAATAGTGACACTTTTCAATTTTCTTGTCACGGCAACCTGGGATGAAGTGATGACGAGTTACACGGAACTAACTGGGACTTCGTGGACTTATTTGTACTTCATTAGCTTCTACTTAGTTACTGTTTTGCTGCTTTTGAACTTGGTTATTGCTTTTGTCTTGGAGGCGTTCTTTGCTGAAATGGATCTTGAGTCTTCGGAAAGTTCTGAAGGAACGGACAAGGATGTTGAAGGTGATAAATATCGAAAAGGAGATAAATATAGAAAACGGTCTATTGGGTATGTATAG 2487 0.3916 RITHPFPVLSLFVVLFSPEDGPVSAERRKQWPRLPPARTVPAFRRYNLRFQLRESRCAHRSGGIVLYVVGKLSLMSLTSSLLERWSSVKAKDQRALLPTCAEDGVGLPEQILDSSNFQNYARFYFIFIKFNLIWSLSYFALIVLNFLEKPLWCKKLATHSCNDREYFYLGQLPYLTDAECLIYEAITLLVLIVHTFFPLSYEGSRIYWKSTFNQLKFDMRQVQYEKAIEEEHNEEKVIPSARMLGCEIVRVMCNMISGPAIMVFCLLVLVVDTLLYAFYLSPLAFDFLPFRIAPYIRVVLFVLNIRELRETITILFGMLDTYLNVLALGLLFLLFASWVAYVFFEDTIQGKTVFTSYGATLYQMFLLFTTSNNPDVWVPAYKSSRWYCLFFVLFVLVGVYFVTNLILAVVYDSFKSELVKQVFEKDLLRRTMLDKAFNLLDTLNIGALNKNQCIRLFEELNKYRTLPKISSEEFELIFDELDDSHDIKINKDEFADICNAIALKFQKEDVMSYFEYLAFYDWPSSKTLKEFVKSAMFGYIVSFILIVNLVAVIIETTMISLCFLSGWIYVVEMLLKVYAYGFENYWRDGQNRFDFVITVIIVIGETVTFAVPDDALPFIANGECIYLRMLLPIALPVPLQDSLPSSCKNVEINKTPNACPEIPSLCSNFLDSHTKFDAIPRDHILCLMHLLFAWCTGEFLVELLMLETRNWNQQLLLKMKNSYLVFNFNDYPNGIVTLFNFLVTATWDEVMTSYTELTGTSWTYLYFISFYLVTVLLLLNLVIAFVLEAFFAEMDLESSESSEGTDKDVEGDKYRKGDKYRKRSIGYV 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02200 828 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 261 627 IPR044581 GO:0005245
Vimu8g02200 828 SUPERFAMILY EF-hand 432 499 IPR011992 -
Vimu8g02200 828 Gene3D - 527 629 IPR027359 -
Vimu8g02200 828 Gene3D - 307 419 - -
Vimu8g02200 828 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Vimu8g02200 828 FunFam Two pore calcium channel protein 1 682 826 - -
Vimu8g02200 828 Gene3D - 424 501 - -
Vimu8g02200 828 FunFam Two pore calcium channel protein 1 307 418 - -
Vimu8g02200 828 Gene3D - 675 824 - -
Vimu8g02200 828 Pfam Ion transport protein 256 416 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu8g02200 828 Pfam Ion transport protein 702 790 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu8g02200 828 Pfam Ion transport protein 536 604 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02200 68 825 Ion Channels AT4G03560 51.282 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02200 K16900 - gmx:100806160 943.725